Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205...    26   9.9  
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626...    26   9.9  

>06_01_0280 -
           2056449-2056487,2056613-2056930,2057025-2057171,
           2057273-2058112,2059044-2059117,2059515-2059647,
           2059804-2059941
          Length = 562

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 177 LAYQRCSYHPDWSYNKRRSLVNEMILRFRLSSNRI 281
           L    CS+HP  + +  RSL    + R R++ N +
Sbjct: 252 LHLSNCSFHPTVTLSGLRSLTRLYLCRVRITENEL 286


>03_06_0143 +
           31962241-31962291,31962385-31962506,31962572-31962671,
           31962775-31962822,31963096-31963251,31963330-31963426,
           31963525-31963567,31963970-31964037,31964139-31964223,
           31964297-31964345,31964566-31964638,31964708-31964768,
           31965417-31965483,31965709-31965762,31965854-31965982,
           31966485-31966548,31966655-31966728,31966793-31966867,
           31966972-31967040,31967759-31967848,31968014-31968121,
           31968251-31968298
          Length = 576

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 284 WCGKQIHYHFSRKKHYGHLIQRI 352
           WCG+Q H    +K H  HL+  +
Sbjct: 28  WCGEQAHVGEIQKTHLRHLMHDV 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,807,877
Number of Sequences: 37544
Number of extensions: 168414
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)