Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   3.3  
SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)                   27   7.7  
SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)            27   7.7  
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)                   27   7.7  

>SB_46633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 255 RFRLSSNRILGAVNKYIIIFRGR--STTVT 338
           R RLSS RI   +NK + +FR R  ST +T
Sbjct: 54  RIRLSSTRITNRMNKQLFLFRIRLSSTRIT 83


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 284 WCGKQIHYHFSRKKHYGHLIQRILSRHYLXCNRH 385
           +C  + HYH+   +HY H       RH+  C RH
Sbjct: 38  YCWYRHHYHYPCYRHYYHRCY----RHHYCCYRH 67


>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
          Length = 175

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 302 HYHFSRKKHYGHLIQRILSRHYLXCNRH 385
           HYH++   H+ HL   +  ++Y+   RH
Sbjct: 99  HYHYNHHHHHFHLHHHLHYQNYIHPYRH 126


>SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)
          Length = 410

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 99  DHSRRVFDLYQRRW*SLPSFC*KL 170
           D + R F LY+RR  S+PS C +L
Sbjct: 252 DDADRAFQLYERRRFSIPSRCGRL 275


>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
          Length = 501

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 192 NAGTRDSSISNKKKASSTIYADKDQIR 112
           N G++ S+ISNKK     +  DK+  R
Sbjct: 163 NQGSKSSAISNKKSKQQKVTQDKESQR 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,363
Number of Sequences: 59808
Number of extensions: 198855
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)