Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   5.6  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    23   5.6  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    22   9.8  

>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 180 AYQRCSYHPDWSYNKRRSLVNEMILRFRL 266
           AYQR S    WS + +R L  + ++ + L
Sbjct: 215 AYQRPSLWNKWSLSVKRRLATDDVIAYCL 243


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 207 PDGSYNAGTRDSSISNKKKASSTIYADKDQ 118
           PD   NA    SS+  KKK  +++ A   Q
Sbjct: 149 PDAEANAPGSGSSLEKKKKKPNSLNAANGQ 178


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 LSSNRILGAVNKYIIIFRGRS 326
           L +NR LG + ++  IFR +S
Sbjct: 795 LKANRTLGFILRFTSIFRDQS 815


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,655
Number of Sequences: 2352
Number of extensions: 7046
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32494788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)