Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13951-1|CAA74289.1|  784|Drosophila melanogaster oxysterol bind...    28   4.1  
AY129448-1|AAM76190.1|  784|Drosophila melanogaster LD31802p pro...    28   4.1  
AE014297-3675|AAF56371.1|  784|Drosophila melanogaster CG6708-PA...    28   4.1  
AE014296-2526|ABC66138.1|  277|Drosophila melanogaster CG33985-P...    27   9.5  

>Y13951-1|CAA74289.1|  784|Drosophila melanogaster oxysterol binding
           protein homologueprotein.
          Length = 784

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 SYNKRRSLVNEMILRFRLSSNRILGAVNKYI 305
           S   R  +VNE    FR++SN ++ A N Y+
Sbjct: 174 SLGSRTKIVNERATLFRITSNAMINAGNDYL 204


>AY129448-1|AAM76190.1|  784|Drosophila melanogaster LD31802p
           protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 SYNKRRSLVNEMILRFRLSSNRILGAVNKYI 305
           S   R  +VNE    FR++SN ++ A N Y+
Sbjct: 174 SLGSRTKIVNERATLFRITSNAMINAGNDYL 204


>AE014297-3675|AAF56371.1|  784|Drosophila melanogaster CG6708-PA
           protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 SYNKRRSLVNEMILRFRLSSNRILGAVNKYI 305
           S   R  +VNE    FR++SN ++ A N Y+
Sbjct: 174 SLGSRTKIVNERATLFRITSNAMINAGNDYL 204


>AE014296-2526|ABC66138.1|  277|Drosophila melanogaster CG33985-PA
           protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +3

Query: 66  RCSVLTVSKKNDHSRRVFDLYQRRW*SLPSFC*KLNCLAYQRCSYHPDWSYNKR 227
           RC  +T + +    R V D+Y         +  +   L  Q+C +   W Y KR
Sbjct: 203 RCLAMTYNPREQCKRHVIDVYPHSDNCNYFYQCRSGYLMVQQCPFFYGWDYEKR 256


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,595
Number of Sequences: 53049
Number of extensions: 285917
Number of successful extensions: 663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1191504915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)