Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...    27   6.8  
AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm rec...    27   6.8  

>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 177 LAYQRCSYHPDWSYNKRRSLVNEMILR 257
           L YQ C YHP + Y    S  ++ +L+
Sbjct: 280 LLYQLCQYHPTYCYESEASSSDDSLLQ 306


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 174 CLAYQRCSYHPDWSYNKRRSLVNEMILRFRLSSNRILGAVN 296
           CL Y   SYH  +      SL N+++  + L  N I  AVN
Sbjct: 112 CLIYFTFSYHATYEQELNASLPNDILNNYNLDPN-IAKAVN 151


>AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical
           protein Y43F4B.2 protein.
          Length = 629

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 198 YHPDWSYNKRRSLVNEMILRFRLSSNRILGAVNKY---IIIFRGRS 326
           YHPDW     +S V   ++ +R  +N   G   K    ++IF  +S
Sbjct: 154 YHPDWFLTNSKSHVLRSLMHYRPIANSPRGISTKRGAPLVIFNNQS 199


>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 298 NTLSFFEEEALRSLNPADSEPSLS 369
           N  +FFE   L+SL P DS  SLS
Sbjct: 382 NDAAFFEPHELKSLIPIDSMDSLS 405


>AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 262 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 403 ILLGEAMPITXEIVTAQNPLD*VTVVLLPRKMIMYLFTAPRILLEDKRNLKIISFT 236
           +++GE + +T  +  A NPL  + +V   RK +   F + +  L  K  +  +S T
Sbjct: 284 VIVGETLSLTIAMYPAMNPLPTIYIVQSYRKAVKDYFISIKNTLLKKPTVIPVSHT 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,956
Number of Sequences: 27780
Number of extensions: 146149
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)