Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    20   9.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   9.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   SSIAYPYCLQRCPLARR 56
           S+IA   C+++CP   R
Sbjct: 99  STIAVCVCMRKCPRRHR 115


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +2

Query: 281 PWCGKQIHYHFSRKKHY 331
           P+C +    ++S K+H+
Sbjct: 9   PYCRRNFSCYYSLKRHF 25


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 90  KKNDHSRRVFDL 125
           K+NDH+ RV D+
Sbjct: 484 KENDHADRVCDM 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,589
Number of Sequences: 438
Number of extensions: 1923
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)