Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    27   3.6  
At2g29770.1 68415.m03617 kelch repeat-containing F-box family pr...    27   3.6  
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    27   3.6  
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER...    27   6.3  
At4g20060.1 68417.m02935 expressed protein  ; expression support...    26   8.3  

>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 128 IKIKYAPRMIVLLRNS*NRAALKSPPGQRAPL*AVRIG 15
           +KI+  P+++V    + + +  KSP G R+P   V +G
Sbjct: 295 VKIRSPPKVLVSPTRNGSNSVRKSPRGSRSPTRTVNLG 332


>At2g29770.1 68415.m03617 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif; similar to SKP1 interacting
           partner 6 (GI:10716957) [Arabidopsis thaliana]
          Length = 387

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 90  KKNDHSRRVFDLYQRRW*SLP 152
           K+NDH   VFD+  R W S+P
Sbjct: 193 KRNDHWIEVFDIENRIWSSVP 213


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  YCLQRCPLARRRFERCSVLTV 86
           +CLQRC +ARRR +R   + V
Sbjct: 95  FCLQRCIIARRRRDRVGPVRV 115


>At1g64470.1 68414.m07309 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 213

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 287 CGKQIHYHFSRKKHYGHLIQRI 352
           CGK   +H  R+++ G+L +RI
Sbjct: 119 CGKVFQFHVDRRRNVGYLKKRI 140


>At4g20060.1 68417.m02935 expressed protein  ; expression supported
           by MPSS
          Length = 1134

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 60  FERCSVLTVSKKNDHSRRVFDLYQRRW*SLPSFC*KLNCL 179
           F+   V   S+    SR V DL +R W   P+ C KLN L
Sbjct: 826 FQEALVPFTSQSGLCSRLVEDLVRRLWKVDPNVCEKLNIL 865


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,863,011
Number of Sequences: 28952
Number of extensions: 137015
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)