Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0414.Seq
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756...    26   9.9  

>11_02_0032 +
           7564153-7564719,7564844-7565128,7565207-7565524,
           7565612-7565839,7566662-7566762,7566852-7566933,
           7567230-7567364,7567460-7567516,7568030-7568167
          Length = 636

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 396 QYWRRINVQQGVLYRKARIYR 334
           +YW+++NV Q  +++ +R YR
Sbjct: 407 EYWQKLNVPQTGMFKPSRQYR 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,058,549
Number of Sequences: 37544
Number of extensions: 119164
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)