Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0413.Seq
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   0.86 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   0.86 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   0.86 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   0.86 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   2.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   3.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   3.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   4.6  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   8.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 NMFANLFKGLFGKKEMRILMVGLDAA 180
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 NMFANLFKGLFGKKEMRILMVGLDAA 180
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 NMFANLFKGLFGKKEMRILMVGLDAA 180
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 NMFANLFKGLFGKKEMRILMVGLDAA 180
           N+FA+ F  +FGK   +I++ G   A
Sbjct: 384 NIFASYFAYIFGKFACKIMIQGFSYA 409


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 255 ETVEYKNISFTVWDVGGQDKIRPL 326
           E +  KNI  TV + G   K++PL
Sbjct: 541 EELNLKNIDLTVLESGAFCKMQPL 564


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 43  VFSLIRDCFGKLYS**FKMGNMFANLFKGLFGKKE 147
           ++ ++  C+GK  S   ++ N F +    LFG KE
Sbjct: 7   IYLIVACCWGKSLSIPQQILNEFKSTLLPLFGLKE 41


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 194 IVVLPAASKPTINILISFLPKRPLNKFAN 108
           +V L   S   I ++ISF+ K+    F N
Sbjct: 85  VVSLSGNSAVFIMLIISFMHKKSFKNFVN 113


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 128 PLNKFANIFPILNYYEY 78
           PL K+ NIF I  +Y++
Sbjct: 17  PLVKYLNIFFITPWYDF 33


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 192 CGFTSCIQTNHQYSHFL 142
           CG+ S +++NH+   F+
Sbjct: 39  CGYHSPLESNHKLVTFI 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,980
Number of Sequences: 336
Number of extensions: 2504
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)