Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0413.Seq
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 108 3e-25
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 91 8e-20
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 59 3e-10
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 51 8e-08
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 39 3e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 39 3e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 36 0.003
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 34 0.007
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 32 0.029
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.068
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 31 0.068
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 29 0.27
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 28 0.48
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 28 0.48
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 27 0.84
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 1.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 1.9
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 26 1.9
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 26 1.9
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 1.9
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 26 1.9
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 26 2.6
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 2.6
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 3.4
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 4.5
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 4.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 4.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 4.5
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 4.5
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 24 7.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 24 7.8
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 24 7.8
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 24 7.8
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 108 bits (260), Expect = 3e-25
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +3
Query: 255 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEA 404
ETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA
Sbjct: 54 ETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEA 103
Score = 93.9 bits (223), Expect = 8e-21
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +1
Query: 97 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 255
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 90.6 bits (215), Expect = 8e-20
Identities = 40/50 (80%), Positives = 41/50 (82%)
Frame = +3
Query: 255 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEA 404
ETV YKNI F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EA
Sbjct: 58 ETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEA 107
Score = 76.6 bits (180), Expect = 1e-15
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = +1
Query: 109 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 255
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNV
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNV 57
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 58.8 bits (136), Expect = 3e-10
Identities = 22/48 (45%), Positives = 36/48 (75%)
Frame = +3
Query: 258 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGE 401
T+E + + FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E
Sbjct: 54 TLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEE 101
Score = 42.3 bits (95), Expect = 3e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVR 258
++E+R+L++GLD AGKTTIL K L E V + PT GF +R
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIR 53
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 50.8 bits (116), Expect = 8e-08
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 255 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEA 404
E + N+ FT +D+GG + R LWR YF G++++VD D ER+ E+
Sbjct: 57 EELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSES 106
Score = 34.3 bits (75), Expect = 0.007
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 243
K ++L +GLD AGKTT+L+ LK + PT+
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 39.1 bits (87), Expect = 3e-04
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 264 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGE 401
+ K I +WD GQ+K R + R+Y++ G + V D +++ E
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEE 103
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 38.7 bits (86), Expect = 3e-04
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 389
+E K + +WD GQ++ R + Y++ G+I V D D++
Sbjct: 52 LEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQD 94
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 35.5 bits (78), Expect = 0.003
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 270 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 389
K I +WD GQ++ R + Y++ G++ + D D++
Sbjct: 56 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKK 95
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 34.3 bits (75), Expect = 0.007
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 273 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 392
++ ++DVGGQ R W + F+N +IF V ND ++
Sbjct: 191 HLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 32.3 bits (70), Expect = 0.029
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 255 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 371
ET + +DVGGQ R W H F+N L+F+V
Sbjct: 227 ETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
Score = 26.6 bits (56), Expect = 1.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 136 GKKEMRILMVGLDAAGKTTILYKLKL 213
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.068
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +3
Query: 273 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 389
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 31.1 bits (67), Expect = 0.068
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 374
++ K I +WD GQ++ R + Y++ G + V D
Sbjct: 54 LDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 91
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.1 bits (62), Expect = 0.27
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 264 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 374
E ++ +WD GQ++ + L Y++N I V D
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYD 96
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 28.3 bits (60), Expect = 0.48
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 374
+E + + +WD GQ++ R L Y +++ I V D
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYD 92
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 0.48
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 267 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 386
+ I F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 55 FGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 0.84
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 383
V+ K ++ +WD GQ++ + L +++ + V D N+
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNN 92
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 332 PPQWSDFVLASNIPHSKTNVFVFYCLTLKPIVGIVVT 222
PP+ SDF++ S H + N F F+ L+ + ++++
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFHETLLRYRLNLIMS 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 154 ILMVGLDAAGKTTILYKLKL 213
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 243
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 255 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 374
+T+ +N I+F++WD+GGQ + + + ++F+ D
Sbjct: 50 KTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFD 91
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 243
KK + ++G +GKT++ +L E TT+P+I
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSI 69
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 118 LFKGLFGKKEMRILMVGLDAAGKTTI 195
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 1.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 383
V+ K ++ +WD GQ++ + L +++ + V + N+
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNN 92
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 2.6
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -3
Query: 254 TLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYYEYN 75
T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y +
Sbjct: 194 TIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKYIHV 250
Query: 74 F 72
F
Sbjct: 251 F 251
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI--FVVDSND 383
V+ +I ++WD GQ++ L + +T ++ F VDS D
Sbjct: 56 VDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD 98
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 3.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 100 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 243
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKL 207
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -1
Query: 325 SGLILSWPPTSHTV-KLMFL 269
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 28 IHWCCVFSLIRDCFGKLYS 84
I WCC+ +IR F K+ S
Sbjct: 819 IVWCCISYIIRQTFDKIDS 837
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 246
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 327 WRHYFQNTQGLIFVVDSNDRERI 395
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 142 KEMRILMVGLDAAGKTTILYKLKLGE 219
K R L+VG + AGK+T+L KL G+
Sbjct: 29 KGSRTLLVGANGAGKSTLL-KLLSGK 53
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 314 FVLASNIPHSKTNVFVFYCLTLKPIV 237
F A+ P SKT FV +CL + +V
Sbjct: 489 FFTANFTPTSKTGAFVSWCLWITVLV 514
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 261 VEYKNISFTVWDVGGQ---DKIRPL 326
V+ ++I +WD GQ D++RPL
Sbjct: 49 VDGRHIELALWDTAGQEDYDRLRPL 73
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 7.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 115 NLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVR 258
N KG K+E + + + TI + + + IPT GFN R
Sbjct: 396 NSLKGFLSKEEFLKFCIQVPGHIRFTIPVLSEENDKLVGIPTFGFNFR 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,634
Number of Sequences: 5004
Number of extensions: 40727
Number of successful extensions: 147
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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