Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0413.Seq
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 294 DVGGQDKIRPLWRH 335
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 16  ELLGIHWCCVFSLIRDCF 69
           EL+     C FSL+RD F
Sbjct: 385 ELMQETHVCFFSLLRDAF 402


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 131 RPLNKFANIFPILNYYEYNFPKQSR 57
           R L K  N+     Y++Y+F  + R
Sbjct: 26  RNLEKSLNVIHEWKYFDYDFGSEER 50


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 383  IVTVYYED*TLCILE 339
            I  V+YED T C+L+
Sbjct: 1433 INNVFYEDETSCMLD 1447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,428
Number of Sequences: 438
Number of extensions: 2861
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)