Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6F439 Cluster: Ribosomal protein L7; n=2; Coelomata|Re...    85   5e-16
UniRef50_P32100 Cluster: 60S ribosomal protein L7; n=39; Fungi/M...    38   0.078
UniRef50_UPI0000F1D986 Cluster: PREDICTED: similar to ribosomal ...    37   0.14 
UniRef50_Q7YY85 Cluster: Cytohesin-like protein, possible; n=5; ...    35   0.73 
UniRef50_Q00U40 Cluster: Chromosome 16 contig 1, DNA sequence; n...    34   0.96 
UniRef50_Q8IC29 Cluster: Putative uncharacterized protein MAL7P1...    33   2.9  
UniRef50_Q7SBD5 Cluster: 60S ribosomal protein L7; n=5; Eukaryot...    32   3.9  

>UniRef50_Q6F439 Cluster: Ribosomal protein L7; n=2; Coelomata|Rep:
           Ribosomal protein L7 - Plutella xylostella (Diamondback
           moth)
          Length = 213

 Score = 85.0 bits (201), Expect = 5e-16
 Identities = 41/60 (68%), Positives = 47/60 (78%)
 Frame = +3

Query: 75  PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           PVKGKEDSKKLPAVPESVLKH           +QVTLKRR++A+KK++ IFKRAE YVKE
Sbjct: 9   PVKGKEDSKKLPAVPESVLKHRKRREALRTRRVQVTLKRRTAALKKRKTIFKRAEAYVKE 68


>UniRef50_P32100 Cluster: 60S ribosomal protein L7; n=39;
           Fungi/Metazoa group|Rep: 60S ribosomal protein L7 -
           Drosophila melanogaster (Fruit fly)
          Length = 252

 Score = 37.9 bits (84), Expect = 0.078
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +3

Query: 75  PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63


>UniRef50_UPI0000F1D986 Cluster: PREDICTED: similar to ribosomal
           protein L7; n=1; Danio rerio|Rep: PREDICTED: similar to
           ribosomal protein L7 - Danio rerio
          Length = 100

 Score = 37.1 bits (82), Expect = 0.14
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 90  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           E  KK+P+VPES+LK            L+     + ++   ++ IFKRAE Y KE
Sbjct: 4   ETKKKIPSVPESLLKRRQRFAAIRAVRLKKAKADKKASKVTRKLIFKRAEAYHKE 58


>UniRef50_Q7YY85 Cluster: Cytohesin-like protein, possible; n=5;
            Cryptosporidium|Rep: Cytohesin-like protein, possible -
            Cryptosporidium parvum
          Length = 1785

 Score = 34.7 bits (76), Expect = 0.73
 Identities = 23/53 (43%), Positives = 27/53 (50%)
 Frame = +1

Query: 73   SPSKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSR 231
            SPS       SC+L  SQCSSI  G  L  LGDY    R   L + RR  +S+
Sbjct: 1359 SPSPLSSQKNSCIL--SQCSSISNGSLLGVLGDYYKVERYNTLANERRANNSK 1409


>UniRef50_Q00U40 Cluster: Chromosome 16 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 16 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 447

 Score = 34.3 bits (75), Expect = 0.96
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 114 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           +PES+LK                 + + +   K+ EIFKRAE+YVKE
Sbjct: 272 IPESILKKRKRDTQWAAQKAAAAAEAKKAQEAKRDEIFKRAEKYVKE 318


>UniRef50_Q8IC29 Cluster: Putative uncharacterized protein
           MAL7P1.17; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL7P1.17 - Plasmodium
           falciparum (isolate 3D7)
          Length = 3535

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 207 KKKREIFKRAEQYV-KETASRNVMKSD*PDKYEILSSCSYLISFTPK*LYLQKIFSERRL 383
           KKK++ +K    Y+ KET   N++K +     ++L+        + K +YL KIF  + +
Sbjct: 133 KKKKKTYKGCPYYLSKETCEENIIKLN-KKMNDVLTKVVKTYKESNKKMYLSKIFELKYI 191

Query: 384 TCLSCYL 404
            C+  ++
Sbjct: 192 NCIFIFM 198


>UniRef50_Q7SBD5 Cluster: 60S ribosomal protein L7; n=5;
           Eukaryota|Rep: 60S ribosomal protein L7 - Neurospora
           crassa
          Length = 248

 Score = 32.3 bits (70), Expect = 3.9
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 114 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKRE-IFKRAEQYVKE 254
           VPE++LK             Q  ++++ +A K+KR  IFKRAE YVKE
Sbjct: 13  VPETLLKKRKSQEKARAER-QAEIEKKKAANKEKRAVIFKRAETYVKE 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,614,010
Number of Sequences: 1657284
Number of extensions: 4293714
Number of successful extensions: 8474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8474
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)