Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   4.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   4.6  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    20   8.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   8.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   8.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 91  KTVRSCLLYQSQCSSIVRGERLFALG 168
           K V  C L +S   + + G R  ALG
Sbjct: 496 KVVAECTLKESAAINQILGRRWHALG 521


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 91  KTVRSCLLYQSQCSSIVRGERLFALG 168
           K V  C L +S   + + G R  ALG
Sbjct: 388 KVVAECTLKESAAINQILGRRWHALG 413


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 215 KATEHVIGCVLCSPGCFSLFRGKAL 239


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 529 KATEHVIGCVLCSPGCFSLFRGKAL 553


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 789 KATEHVIGCVLCSPGCFSLFRGKAL 813


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 789 KATEHVIGCVLCSPGCFSLFRGKAL 813


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 762 KATEHVIGCVLCSPGCFSLFRGKAL 786


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 762 KATEHVIGCVLCSPGCFSLFRGKAL 786


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 789 KATEHVIGCVLCSPGCFSLFRGKAL 813


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 82  KGRKTVRSCLLYQSQCSSIVRGERL 156
           K  + V  C+L    C S+ RG+ L
Sbjct: 789 KATEHVIGCVLCSPGCFSLFRGKAL 813


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,014
Number of Sequences: 336
Number of extensions: 1100
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)