Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    27   1.1  
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    27   1.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   2.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   3.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   6.0  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 96  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  E
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAE 62


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 117 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           PES+LK            +    +++S+  KK+  I KRAE Y  E
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAE 61


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 79  SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSRK 255
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S  R+
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQRR 76


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = +3

Query: 195 SSAIKKKREIFKRAEQYVK--ETASRNVMKSD*PDK---YEILSSCSY-LISFTPK*LYL 356
           +S IKK + +FK+ ++ VK  +   R ++ +D       +  +S+C Y   +F PK  +L
Sbjct: 120 TSRIKKIKNLFKKEKKQVKPEDLGPRQIILNDYSANHFLHNAVSTCKYSAFTFLPK--FL 177

Query: 357 QKIFSE 374
           ++ FS+
Sbjct: 178 KEQFSK 183


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 229 LKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 80
           LK +   L +E  + + + NL+V+    +L      + T G FL SS P+
Sbjct: 239 LKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,362
Number of Sequences: 5004
Number of extensions: 19810
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)