Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    33   0.066
01_07_0218 + 42073425-42073561,42073714-42073743,42073957-420741...    30   0.62 
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    29   1.1  
01_06_1538 - 38094982-38095149,38095230-38095597,38095960-380960...    28   3.3  
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    27   7.6  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 102 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +E
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQE 57


>01_07_0218 +
           42073425-42073561,42073714-42073743,42073957-42074137,
           42074742-42074806,42075374-42075545,42076570-42076769,
           42076872-42076944,42077150-42077401
          Length = 369

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 143 EERGSSH*EITGYA--KEAFFCHQEEEGNLQEG*TVRQGNRIKERDEIRLARQV*DFV 310
           EERG    +I      KEA+  H  E+G L+    ++ G  +  RD   L +   DF+
Sbjct: 266 EERGQVQYKIPSKKALKEAYEKHHTEQGQLKREEFIKIGKEVIRRDSFTLGKATMDFI 323


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 114 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +E
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEE 56


>01_06_1538 -
           38094982-38095149,38095230-38095597,38095960-38096003,
           38096430-38096449
          Length = 199

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 280 DFITFLDAVSLTYCSALLKISLFFLMA 200
           DF T +DA+S  + +  + +S+F LMA
Sbjct: 79  DFGTSMDAISFGFAATAILVSMFLLMA 105


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 265 LDAVSLTYCSALLKISLFFLMAEER 191
           +D V+LTY SAL K++L +  A ER
Sbjct: 730 VDVVNLTYKSALSKLALAWTPAAER 754


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,770,274
Number of Sequences: 37544
Number of extensions: 119286
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)