Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       43   8e-05
SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   2.6  
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +3

Query: 90  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKETASRN 269
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKE   + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 270 V 272
           V
Sbjct: 63  V 63


>SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 23/70 (32%), Positives = 37/70 (52%)
 Frame = -1

Query: 283 SDFITFLDAVSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGS 104
           S F+T L  ++     AL+ ++ FF +   R +S     L +R+ +++  +S D G   S
Sbjct: 92  SAFLTILSFIASVMSLALIAVNRFFFIVRWRSYS----SLFKRSRVVI-YISIDWGI--S 144

Query: 103 FLLSSFPLTG 74
            LLSS PL G
Sbjct: 145 LLLSSPPLLG 154


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 184 SVTCNLLVRRASLLLRCLSTDSG 116
           SVTCNL +    L  RC S DSG
Sbjct: 13  SVTCNLDITDGYLNARCNSQDSG 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,560
Number of Sequences: 59808
Number of extensions: 136788
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)