Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p pro...    38   0.005
AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA...    38   0.005
X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal  pro...    30   1.3  

>AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p
           protein.
          Length = 252

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +3

Query: 75  PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63


>AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA
           protein.
          Length = 252

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +3

Query: 75  PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63


>X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal
           protein protein.
          Length = 239

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 105 LPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 254
           LPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 1   LPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,000,779
Number of Sequences: 53049
Number of extensions: 198423
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)