Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    38   0.003
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    27   5.2  
D49525-2|BAA08471.1|  567|Caenorhabditis elegans TPA-1B protein.       27   6.9  
D49525-1|BAA08470.1|  704|Caenorhabditis elegans TPA-1A protein.       27   6.9  
D14815-1|BAA03556.1|  557|Caenorhabditis elegans TPA-1 protein.        27   6.9  
AF078781-3|AAC26917.1|  567|Caenorhabditis elegans Tpa (tetradec...    27   6.9  
AF078781-2|AAC26916.1|  704|Caenorhabditis elegans Tpa (tetradec...    27   6.9  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = +3

Query: 96  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKETASRNVM 275
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+E   RN  
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQE--YRNAQ 61

Query: 276 K 278
           K
Sbjct: 62  K 62


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 187 FSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSF 86
           F  TC+ L  ++ L L  L T  GT+ SF LS F
Sbjct: 238 FKQTCSALTSKSMLQLFPLFTVLGTSSSFWLSIF 271


>D49525-2|BAA08471.1|  567|Caenorhabditis elegans TPA-1B protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 CQVVVI*SVLHQNDFTYRKFSVKEDLLAC 393
           C++VV    LH N+  YR   +   LL C
Sbjct: 344 CEIVVALQFLHTNNIIYRDLKLDNVLLDC 372


>D49525-1|BAA08470.1|  704|Caenorhabditis elegans TPA-1A protein.
          Length = 704

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 CQVVVI*SVLHQNDFTYRKFSVKEDLLAC 393
           C++VV    LH N+  YR   +   LL C
Sbjct: 481 CEIVVALQFLHTNNIIYRDLKLDNVLLDC 509


>D14815-1|BAA03556.1|  557|Caenorhabditis elegans TPA-1 protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 CQVVVI*SVLHQNDFTYRKFSVKEDLLAC 393
           C++VV    LH N+  YR   +   LL C
Sbjct: 334 CEIVVALQFLHTNNIIYRDLKLDNVLLDC 362


>AF078781-3|AAC26917.1|  567|Caenorhabditis elegans Tpa
           (tetradecanoyl phorbol acetate)resistant protein 1,
           isoform b protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 CQVVVI*SVLHQNDFTYRKFSVKEDLLAC 393
           C++VV    LH N+  YR   +   LL C
Sbjct: 344 CEIVVALQFLHTNNIIYRDLKLDNVLLDC 372


>AF078781-2|AAC26916.1|  704|Caenorhabditis elegans Tpa
           (tetradecanoyl phorbol acetate)resistant protein 1,
           isoform a protein.
          Length = 704

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 CQVVVI*SVLHQNDFTYRKFSVKEDLLAC 393
           C++VV    LH N+  YR   +   LL C
Sbjct: 481 CEIVVALQFLHTNNIIYRDLKLDNVLLDC 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,871,025
Number of Sequences: 27780
Number of extensions: 107676
Number of successful extensions: 261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)