Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0411.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)              36   0.010
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)              36   0.010
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)              32   0.13 
At1g33970.1 68414.m04212 avirulence-responsive protein, putative...    26   8.5  

>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 114 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKETASRN 269
           VPESVLK                +  +  +++ ++ IFKRAEQY KE A ++
Sbjct: 13  VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 64


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 114 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKETASRN 269
           VPESVLK                +  +  +++ ++ IFKRAEQY KE A ++
Sbjct: 8   VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 59


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 114 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKETASR 266
           VPESVLK             Q     +    + ++ IFKRAEQY KE A +
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEK 58


>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
           avirulence induced gene protein, putative / AIG protein,
           putative similar to SP|P54120 AIG1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF04548: AIG1 family
          Length = 342

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 186 KRRSSAIKKKREIFKRAEQYVKE 254
           KR S  IKK RE  +RAE+  KE
Sbjct: 309 KRSSDEIKKLRENLERAEKETKE 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,507,880
Number of Sequences: 28952
Number of extensions: 102998
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)