Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0409.Seq
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.9  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   5.9  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   5.9  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    20   7.7  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    20   7.7  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 358 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPA 266
           G  G      HT   K+ G  GSV +R  PA
Sbjct: 236 GNAGTHFWHAHTGLQKMDGLYGSVVIRQPPA 266


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 358 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPA 266
           G  G      HT   K+ G  GSV +R  PA
Sbjct: 236 GNAGTHFWHAHTGLQKMDGLYGSVVIRQPPA 266


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 278 PDCYRTTLAGDLARDGVWLSD 340
           PD  R+  AG    DG  LSD
Sbjct: 418 PDQQRSIFAGKQLEDGRTLSD 438


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 278 PDCYRTTLAGDLARDGVWLSD 340
           PD  R+  AG    DG  LSD
Sbjct: 86  PDQQRSIFAGKQLEDGRTLSD 106


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 334 KPHTVPCKVT 305
           + HT+PCK T
Sbjct: 2   RTHTLPCKCT 11


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = -1

Query: 104 PDLWRDIPLTKSPYSEFK 51
           PD+W+ +     P  E++
Sbjct: 93  PDMWKQLEAKYDPSGEYR 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,472
Number of Sequences: 336
Number of extensions: 2132
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)