Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0409.Seq
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    88   5e-19
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.26 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   4.3  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   5.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.4  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    24   7.4  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    24   7.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    24   9.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 87.8 bits (208), Expect = 5e-19
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = -2

Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTELCLRQFLRSFFR 215
           I+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG  L      + F +
Sbjct: 129 IMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQ 188



 Score = 73.3 bits (172), Expect = 1e-14
 Identities = 32/71 (45%), Positives = 44/71 (61%)
 Frame = -1

Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
           P   G+V+APV K+ LQ+AG++DCYT +RGST TLGNF              LTP+LW +
Sbjct: 172 PRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAE 231

Query: 86  IPLTKSPYSEF 54
            P  ++P  E+
Sbjct: 232 RPFGQTPIEEY 242


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 229 RSFFRWLVYRTATPQLVVQL 170
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 296 WFCNSPADSCPSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 153
           W CNS   + P+W    +  +P+   Q +  +       G+ GT+G F
Sbjct: 366 WKCNSLTKTLPNW---KTRGIPEYCAQPSMAEGMIRCKPGAGGTIGFF 410


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 130 LPRHMPTSLLTCGGT 86
           LPR +PTSLLT  G+
Sbjct: 27  LPRSIPTSLLTAAGS 41


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 56  TLSMET*SAGCPSTSQE*GRHMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQP 214
           TLS  + S G P   +  GRH S  +   W+ Q F   + +     S   H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 329 WLSDLVTPVTSSNW 370
           ++S++VTP T++NW
Sbjct: 192 YVSEVVTPTTTNNW 205


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 142 HMLPLPRHMPTSLLTCGGT 86
           H +P   HM T+  +CGGT
Sbjct: 268 HFIPPSFHMQTTCDSCGGT 286


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 210 WCTGLLHLSSWFNWHLGKFC*SHICCHCQD 121
           WC     LSSWFN  L K    ++   CQ+
Sbjct: 59  WCM----LSSWFNSKLSKLSAGYLQFDCQN 84


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 276 SRTVTEPHLPVTLQGTVCGFPILLPQ 353
           SRT++ P+ P++        PILLP+
Sbjct: 420 SRTISSPNSPLSATVLPSSTPILLPR 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,009
Number of Sequences: 5004
Number of extensions: 35262
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)