Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0409.Seq
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 102 1e-22
03_06_0386 + 33555682-33556344,33557138-33557299 100 4e-22
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 47 5e-06
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 28 3.1
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 4.1
09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874 27 4.1
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264... 26 9.6
04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800 26 9.6
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 102 bits (244), Expect = 1e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 142 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 188
Score = 74.1 bits (174), Expect = 4e-14
Identities = 34/71 (47%), Positives = 45/71 (63%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WR+
Sbjct: 185 PRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRE 244
Query: 86 IPLTKSPYSEF 54
K+P+ E+
Sbjct: 245 TRFIKTPFQEY 255
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 100 bits (240), Expect = 4e-22
Identities = 42/47 (89%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 139 ILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGS 185
Score = 77.8 bits (183), Expect = 3e-15
Identities = 36/71 (50%), Positives = 45/71 (63%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WRD
Sbjct: 182 PRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRD 241
Query: 86 IPLTKSPYSEF 54
KSP+ E+
Sbjct: 242 TKFVKSPFQEY 252
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 153
P +V+ VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 70 PMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -2
Query: 334 KPHTVPCKVTGKCGSVTVRLIPAPRGTEL 248
KPHTV CKV K GSVTVR++ P G+ +
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSV 75
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 225 LLRNWRRHNSVPRG--AGISRTVTEPHLPVTLQGT 323
L R WRR P G A S T T P V L GT
Sbjct: 6 LRRKWRRRRDKPAGDAAAASTTATSPRDSVDLGGT 40
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 335 KATHRPLQGHRQVWFCNSPADSCPSW 258
K H L G + W+ N PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874
Length = 257
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 268 APRGTELCLRQFLRSFFRWLVYRT 197
APRG F+R++FR+L YR+
Sbjct: 80 APRGKSPAFSAFVRAYFRFLNYRS 103
>04_04_0426 +
25125590-25125670,25126171-25126256,25126423-25126471,
25126547-25126675,25126973-25127055,25127791-25127959,
25128038-25128103
Length = 220
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 131 WQHMWL*QNFPRCQLNHELRCSSPVH 208
W+H + CQ+N E+RC + H
Sbjct: 186 WEHTSSDEPIAACQVNQEMRCYTTKH 211
>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
Length = 456
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 358 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
GY N++ T+PC++ + + R PAP T
Sbjct: 420 GYGRNRLVSLDTLPCRLCERASRMGGRHAPAPNAT 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,825
Number of Sequences: 37544
Number of extensions: 260224
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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