Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0409.Seq
(395 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 2e-22
SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8) 29 1.4
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 1.8
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_55250| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 27 4.2
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 27 4.2
SB_56183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_48682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_27193| Best HMM Match : Metallophos (HMM E-Value=7.6e-11) 26 9.6
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 101 bits (242), Expect = 2e-22
Identities = 44/47 (93%), Positives = 45/47 (95%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS VRLIPAPRGT
Sbjct: 104 ILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGT 150
Score = 91.5 bits (217), Expect = 2e-19
Identities = 42/71 (59%), Positives = 48/71 (67%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIVSAPVPKKLLQMAG++DCYTS RG T TLGNF YLTPD+W++
Sbjct: 147 PRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWKE 206
Query: 86 IPLTKSPYSEF 54
TK+PY EF
Sbjct: 207 TVFTKTPYQEF 217
>SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8)
Length = 176
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 277 LIPAPRGTELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLL 101
++P PR + + + F + R TP VV A E +L + P+ +H+ S +
Sbjct: 101 IVPDPRDDGKAVERVFQKVFYYPARRYPTPDAVVPRATMESILPALLGPIVKHLAKSAI 159
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -2
Query: 373 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 254
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 275 DSCPSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 153
DSC WY + P K+ Q G+ + YTS T L NF
Sbjct: 110 DSCDKWYHVRCMDTPTKVYQ--GLNNSYTSWICCTCGLPNF 148
>SB_55250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 310 VTGKCGSVTVRLIPAPRGTELCLRQFLRSFFRW 212
V K G V R I + RGTE + L+ FFRW
Sbjct: 198 VVAKLGGVA-RRIRSDRGTENTVISALQQFFRW 229
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 317 LQGHRQVWFCNS-PADSCPS 261
LQ HR WFC S P +CP+
Sbjct: 87 LQSHRHPWFCVSCPTVTCPT 106
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 308 HRQVWF-CNSPADSCPSWYGIVS-----APVPK 228
+RQ W+ CN P + P +YG+V AP P+
Sbjct: 29 YRQHWWKCNGPCQNRPPFYGVVKRSMNRAPAPR 61
>SB_56183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 254 RTTRGR-NQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSK 391
R GR N P+ + G R +W DLV P S + R L K
Sbjct: 67 RVFHGRANDPNIAAQIVHGVNTRPSLWAEDLVNPTRKSLFAQRMLEK 113
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 161 PRCQLNHELRCSSPVHQPSEEAS*ELAQTQFRTTRGRNQPDCYRTT 298
P E S+ +H+ S+E + E A F+T ++ C+R T
Sbjct: 489 PEADTGEEEEESAGMHESSDEKTSEDADEGFKTRSNQHDHQCHRRT 534
>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1533
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 164 RCQLNHELRCSSPVHQPSEEAS*-ELAQTQFRTTRGRNQPDCYRTTLAGDLARDGVWLSD 340
+ LN++ ++P H + +S +L+Q + +PDC T A DLAR L
Sbjct: 519 KIHLNYDF-ATAPEHMAALPSSAIQLSQDDHQYLVAEKRPDCLDATPATDLARVDACLPA 577
Query: 341 LVTP 352
+ P
Sbjct: 578 IAVP 581
>SB_48682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 343 KIGKPHTVPCKVTGKCGSVTVRLIPAPRGTELCLRQ 236
K+ PH VP + C + T ++ P P E+ +Q
Sbjct: 101 KVSPPHPVPAHIPTPCYAETGKVPPHPWSVEIKTKQ 136
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 343 KIGKPHTVPCKVTGKCGSVTVRLIPAPRGTELCLRQ 236
K+ PH VP + C + T ++ P P E+ +Q
Sbjct: 15 KVSPPHPVPAHIPTPCYAETGKVPPHPWSVEIKTKQ 50
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 379 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 263
+V RG+W + + H + C V +CG + L AP
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAP 340
>SB_27193| Best HMM Match : Metallophos (HMM E-Value=7.6e-11)
Length = 341
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 311 GHRQVWFCNSPADSCPSWYGIVSAPVPKKLLQMAGVQDCY 192
GHR ++ N D C + IV +P+K G++D +
Sbjct: 185 GHRPMYCSNLDRDDCTNHLSIVRTGIPEK--NKPGLEDLF 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,278
Number of Sequences: 59808
Number of extensions: 285428
Number of successful extensions: 706
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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