Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0409.Seq
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    94   4e-20
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    28   2.8  
Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-l...    26   8.5  
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l...    26   8.5  
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto...    26   8.5  
AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    26   8.5  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    26   8.5  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 93.9 bits (223), Expect = 4e-20
 Identities = 40/47 (85%), Positives = 43/47 (91%)
 Frame = -2

Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
           + AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGT
Sbjct: 152 VAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGT 198



 Score = 86.6 bits (205), Expect = 6e-18
 Identities = 41/68 (60%), Positives = 47/68 (69%)
 Frame = -1

Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
           P   GIVSAPVPKKLL MAG++DCYT+A+GST TLGNF             YLTPDLW++
Sbjct: 195 PRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKE 254

Query: 86  IPLTKSPY 63
             L KSPY
Sbjct: 255 EALEKSPY 262


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 229 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 95
           R FF+ L+Y+  +P     + P  ++L      L  ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284


>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 244 LRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTCGGT 86
           LR+  + FF+ LV +  TP +++   P  I++   +  L   +P+ ++ C  T
Sbjct: 243 LRKHHKQFFKTLVLQITTPTIIL-FIPITIIIFLPLFHLDVSLPSGVMLCSFT 294


>U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoformb protein.
          Length = 937

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 VAVLYTSHLKKLLRNWRRHNSVPRGAGISRTVTEPHLPVTLQGT 323
           V++ + SH++++L N       P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoforma protein.
          Length = 1009

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 VAVLYTSHLKKLLRNWRRHNSVPRGAGISRTVTEPHLPVTLQGT 323
           V++ + SH++++L N       P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
           protein.
          Length = 1009

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 VAVLYTSHLKKLLRNWRRHNSVPRGAGISRTVTEPHLPVTLQGT 323
           V++ + SH++++L N       P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 VAVLYTSHLKKLLRNWRRHNSVPRGAGISRTVTEPHLPVTLQGT 323
           V++ + SH++++L N       P  + +  T  +P+LP  LQ T
Sbjct: 379 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 422


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 358 GYWGNKIGKPHTVPCKV 308
           GY+G+ +G  HT+ CK+
Sbjct: 310 GYFGSPVGPEHTLSCKM 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,758,283
Number of Sequences: 27780
Number of extensions: 204324
Number of successful extensions: 513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)