Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0409.Seq
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   1.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   1.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   1.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   2.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   9.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   9.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   9.0  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 210 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 115
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 36  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 210 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 115
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 210 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 115
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 316 CKVTGKCGSVTVRLIPAPRGTE 251
           C + G CG +   +   P+GT+
Sbjct: 75  CPICGACGDIAHTVKYCPKGTK 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 130 LPRHMPTSL 104
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 372 YQFEEVTGVTRSESHTPSLARSPASVVL 289
           YQ    +G+T++  H+  +A  P  V +
Sbjct: 631 YQHNVASGLTKARGHSLLVADRPNFVTI 658


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 136 LPLPRHMP 113
           LPLP+H+P
Sbjct: 504 LPLPQHLP 511


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 136 LPLPRHMP 113
           LPLP+H+P
Sbjct: 419 LPLPQHLP 426


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 136 LPLPRHMP 113
           LPLP+H+P
Sbjct: 738 LPLPQHLP 745


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,212
Number of Sequences: 438
Number of extensions: 2458
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)