Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0409.Seq
(395 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 102 1e-22
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 102 1e-22
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 102 1e-22
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 102 1e-22
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 102 1e-22
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 101 1e-22
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 2.6
At5g55820.1 68418.m06956 expressed protein 27 6.0
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 6.0
At2g29930.3 68415.m03638 F-box family protein contains F-box dom... 27 6.0
At2g29930.2 68415.m03636 F-box family protein contains F-box dom... 27 6.0
At2g29930.1 68415.m03637 F-box family protein contains F-box dom... 27 6.0
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res... 27 6.0
At5g06550.1 68418.m00739 transcription factor jumonji (jmjC) dom... 26 7.9
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 26 7.9
At1g72390.1 68414.m08373 expressed protein 26 7.9
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 102 bits (244), Expect = 1e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 150 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 196
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++
Sbjct: 193 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 252
Query: 86 IPLTKSPYSE 57
++SPY E
Sbjct: 253 TRFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 102 bits (244), Expect = 1e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 149 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 195
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 86 IPLTKSPYSE 57
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 102 bits (244), Expect = 1e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 149 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 195
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 86 IPLTKSPYSE 57
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 102 bits (244), Expect = 1e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 149 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 195
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 86 IPLTKSPYSE 57
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 102 bits (244), Expect = 1e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 149 ILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 195
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 86 IPLTKSPYSE 57
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 101 bits (243), Expect = 1e-22
Identities = 42/47 (89%), Positives = 47/47 (100%)
Frame = -2
Query: 394 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 254
ILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+
Sbjct: 141 ILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 187
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = -1
Query: 266 PSWYGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRD 87
P GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++
Sbjct: 184 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 243
Query: 86 IPLTKSPYSE 57
+KSPY E
Sbjct: 244 TRFSKSPYQE 253
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 328 HTVPCKVTGKCGSVTVRL 275
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 191 CSSPVHQPSEEAS*ELAQTQFRTTRGRNQPDCYRTT 298
CSSP H ++ L T ++G P C TT
Sbjct: 214 CSSPEHSKNQRVETNLDATSPGCSQGEKVPKCVSTT 249
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 294 PHLPVTLQGTVCGFP 338
PHLP+ L G C FP
Sbjct: 1230 PHLPMVLHGLTCTFP 1244
>At2g29930.3 68415.m03638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 269 CPSWYGIVSAPVPKKL 222
CP+W G+VS+P K+L
Sbjct: 198 CPAWKGLVSSPSIKRL 213
>At2g29930.2 68415.m03636 F-box family protein contains F-box domain
Pfam:PF00646
Length = 339
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 269 CPSWYGIVSAPVPKKL 222
CP+W G+VS+P K+L
Sbjct: 78 CPAWKGLVSSPSIKRL 93
>At2g29930.1 68415.m03637 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 269 CPSWYGIVSAPVPKKL 222
CP+W G+VS+P K+L
Sbjct: 198 CPAWKGLVSSPSIKRL 213
>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
responsive-to-antagonist 1, putative /
copper-transporting ATPase, putative similar to ATP
dependent copper transporter SP|Q9S7J8 [Arabidopsis
thaliana]
Length = 995
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 105 SEVGICLG-NGSICGFSKISQGAS*TTS*GVAVLYTSHLKKLL---RNWRRHNSVPRGAG 272
++ GI + N + G +S + +++L + ++K ++ NW NS+ R G
Sbjct: 775 AQTGILVSINSELIGVLSVSDPLKPSAREAISILKSMNIKSIMVTGDNWGTANSIAREVG 834
Query: 273 ISRTVTE 293
I + E
Sbjct: 835 IDSVIAE 841
>At5g06550.1 68418.m00739 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 319
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +3
Query: 237 WRRHNSVPRGAGIS-----RTVTEPHLPVTLQGTVCGFPIL 344
W R +++ R GIS EP+ PV L+G + G+P +
Sbjct: 5 WLRRDNITRVRGISVEDFITKFEEPNKPVLLEGCLDGWPAI 45
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 226 SFFRWLVYRTATPQLVVQLAPWEILLKPHMLPL 128
SF+RW+ + Q + AP + LLK H PL
Sbjct: 328 SFYRWIQETAVSNQELNNNAPRQGLLKKHRNPL 360
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 116 HMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQPSEEAS*ELAQTQ 250
+M+ Q Q L Q + QL H+ + P+ QPS++ + Q Q
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQ 964
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,341,520
Number of Sequences: 28952
Number of extensions: 197615
Number of successful extensions: 531
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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