Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0407.Seq
         (411 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55GI3 Cluster: Putative uncharacterized protein; n=1; ...    33   2.3  
UniRef50_Q9TYW8 Cluster: Putative uncharacterized protein W05E7....    31   9.1  
UniRef50_A2DIV7 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  
UniRef50_A5DPH0 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  

>UniRef50_Q55GI3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1013

 Score = 33.1 bits (72), Expect = 2.3
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 180 VLCVSHMDXQKQ*R*HLNNHDHYTYKFLQYTYYVP-IIISTFIKYVSIICQENLQPSFNE 356
           +LC+   +  KQ +  +NN+++     +   YY+P +++ +FIK     C   + P  N 
Sbjct: 269 LLCLLTQNIPKQQKLKINNNNNNNNNSIDRYYYLPSLLLESFIKVFWKSCYSRITPKIN- 327

Query: 357 LQWKESDTHYSNA*EKL 407
             WK+ D  Y    ++L
Sbjct: 328 --WKK-DVDYQRMVDQL 341


>UniRef50_Q9TYW8 Cluster: Putative uncharacterized protein W05E7.2;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein W05E7.2 - Caenorhabditis elegans
          Length = 334

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 109 PTPTNNYKISQTVCLLCIHLLIEKFYVY 192
           P+P +   IS  VC+LC ++++  FYVY
Sbjct: 18  PSPFHFLWISTLVCILCCYIVLFPFYVY 45


>UniRef50_A2DIV7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 273

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 40  NFLPITFLYS*KHIFLLIKQYFIPTPTNNYKISQTVCLLCIHLLI 174
           N++P+T L++   I  +I +YFI  P + Y I+   C+  +  LI
Sbjct: 108 NWIPLTLLFAVASISSIILEYFIFDPHDLYSIAAARCVYHLLFLI 152


>UniRef50_A5DPH0 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 373

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 102 LHTHSDQ*LQNITDCVFIMYTSSHRKVLCVSHMD 203
           LHTH D  + +   CV + +T++H   LC   MD
Sbjct: 237 LHTHMDTLIIDPKSCVLLAFTTTHSCSLCTPLMD 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,306,893
Number of Sequences: 1657284
Number of extensions: 7625557
Number of successful extensions: 15708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15697
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)