Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0407.Seq
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   0.86 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   1.1  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    27   1.5  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    27   1.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   1.5  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   2.0  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   2.0  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   3.5  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   3.5  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   3.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.6  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   4.6  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   6.1  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    24   8.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   8.0  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    24   8.0  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   8.0  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.0  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 318 IICQENLQPSFNELQWKESDTHYS 389
           I+C+ENL+  FNEL     +TH S
Sbjct: 394 IMCKENLRSLFNELHSVMMETHES 417


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 274 IMYLSLYQHL*NTFQLFVKRI 336
           + YL+LYQH  NTF+L V  +
Sbjct: 475 VQYLTLYQHSSNTFRLRVTTV 495


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 246 YTYKFLQYTYYVPIIISTFIKYVSII---CQENLQPSFNELQWKESDTHYSN 392
           + Y     T+  P I +   K++S++   C++ L  S   LQWK++   ++N
Sbjct: 142 FLYTHSGMTHITPSIRNDSTKFLSLLINACKDRLSSSAISLQWKKTLECFTN 193


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 136 SQTVCLLCIHLLIEKFYVYHTWTVKSNK 219
           S T+ + C  L I  FY Y TWT    K
Sbjct: 122 SVTIGITCPILFIAIFYFYETWTKACGK 149


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 DHYTYKFLQYTYYVPIIISTFIKY 311
           D+Y Y FLQ  +Y  I  + +I Y
Sbjct: 386 DNYYYSFLQVVHYTSITAAGYISY 409


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 48  TNNVLIFLKTYIPFNQAILHTHSDQ*LQ-NITDCVFIMYTSSHRKVL 185
           T+N ++F++ Y+   QAI+   S+   Q N  D   ++ +S+ RK++
Sbjct: 593 TSNTMLFMQHYLRTRQAIMFRLSNGIFQFNFLDHRKVVISSTARKII 639


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +1

Query: 25  IQQLYNFLPITFLYS*KHIFLLIKQYFIPT-PTNNYKISQTVCLLCIHLLIEKFYVYHTW 201
           I+ L +F PI  L      +L  K  F        + +    CL+C   LI   Y Y TW
Sbjct: 75  IKLLISFTPIYVLNVLAICYLKYKDAFFKNYGAAEWTLFGFWCLVCTLALIFLTYFYETW 134

Query: 202 T 204
           T
Sbjct: 135 T 135


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 148 CLLCIHLLIEKFYVYHTW 201
           C +C+ + I  +Y Y TW
Sbjct: 144 CAICLMIFISLWYFYETW 161


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 148 CLLCIHLLIEKFYVYHTWT 204
           CL+C   LI   Y Y TWT
Sbjct: 117 CLVCTLALIFLTYFYETWT 135


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 148 CLLCIHLLIEKFYVYHTWT 204
           CL+C   LI   Y Y TWT
Sbjct: 117 CLVCTLALIFLTYFYETWT 135


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 130 KISQTVCLLCIHLLIEKFYVYHTWTVKSNKD 222
           KI+  +  L  H +   F VY+   VK NKD
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVKLNKD 607


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 25  IQQLYNFLPITFLYS*KHIFLLIKQ-YFIPTPTNNYKISQTVCLLCIHLLIEKFYVYHTW 201
           I+ L +F PI  L      +L  K  +F       + +    CL+C   LI   Y Y TW
Sbjct: 75  IKLLISFTPIYVLNVLAICYLTYKDAFFKDYGAAEWTLFGFWCLVCTLALIFLTYFYETW 134

Query: 202 TVKSNK 219
            VK+ K
Sbjct: 135 -VKAVK 139


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 291 ISTFIKYVSIICQENLQPSFNELQWKES 374
           +S F++   I C +  QP    LQW +S
Sbjct: 3   VSLFLQKQIIECSKAFQPHSTRLQWPKS 30


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 330 ENLQPSFNELQWKESDTHYSN 392
           E  +  +N + WKE+++ YSN
Sbjct: 197 EYFKAIWNVINWKEAESRYSN 217


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 76  HIFLLIKQYFIPTPTNNYKISQTVCLLCIHLLIEKFYVY 192
           HI L I  Y     +  Y + ++ CL C H  + K  V+
Sbjct: 79  HIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVH 117


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 157 IINTQSVIFCSYWSEWV 107
           IIN    I C  W  WV
Sbjct: 440 IINNMDQIICGQWGNWV 456


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +1

Query: 91  IKQYFIPTPTNNYKISQTVCLLCIHLLIEKFYVYHTWTVKSNKDD 225
           I + ++P P+  YK  Q+V  +C+ + + +   + ++   + K +
Sbjct: 793 ISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQE 837


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 HYTYKFLQYTYYVPIIISTFIK 308
           HY++ F+ + ++   + S FIK
Sbjct: 552 HYSFLFVSFMFFCAFVCSMFIK 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,132
Number of Sequences: 5004
Number of extensions: 37159
Number of successful extensions: 88
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)