Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0407.Seq
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0115 - 856957-858055,858479-858538,858802-859583                 28   3.3  
02_05_0151 - 26299042-26299207,26301678-26301851,26301926-263019...    27   5.8  

>01_01_0115 - 856957-858055,858479-858538,858802-859583
          Length = 646

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -3

Query: 409 YNFSHALE*CVSDSFHCNSLNEGCRFS*QI---IETYFINVDIMIGT 278
           Y +S  ++ C++ SFHC + + GC  +  +   ++ +FI V ++I T
Sbjct: 246 YVYSSKIKQCIAQSFHCPT-DRGCNTTGHVDFEVDCWFILVPLVILT 291


>02_05_0151 -
           26299042-26299207,26301678-26301851,26301926-26301987,
           26302082-26302329,26303341-26303416,26303796-26303987,
           26304109-26304225
          Length = 344

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 110 GMKYCLIKRN-ICF*EYKNVIGKKLYSCCILKQNE 9
           G   CL+ RN I F +   VIG+K+  CC   Q E
Sbjct: 34  GFTTCLLGRNSILFGKTTVVIGEKVEHCCRWSQEE 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,548,816
Number of Sequences: 37544
Number of extensions: 176791
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)