Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0407.Seq
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical ... 31 0.33
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 29 1.7
Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical pr... 27 5.3
U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 27 7.0
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 27 7.0
AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 27 7.0
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 27 7.0
AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 27 7.0
AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 27 7.0
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 27 7.0
AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 27 7.0
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 27 7.0
Z81062-1|CAB02945.2| 365|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 26 9.2
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 26 9.2
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 26 9.2
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 26 9.2
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 26 9.2
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 26 9.2
>AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical
protein W05E7.2 protein.
Length = 334
Score = 31.1 bits (67), Expect = 0.33
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 109 PTPTNNYKISQTVCLLCIHLLIEKFYVY 192
P+P + IS VC+LC ++++ FYVY
Sbjct: 18 PSPFHFLWISTLVCILCCYIVLFPFYVY 45
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 135 ITDCVFIMYTSSHRKVLCVSHMDXQKQ*R*HLNNHDHYTYKF 260
IT CV ++T +R +C+ H+D +K R L HY + F
Sbjct: 101 ITACVINLHTMYYR-TMCLVHLDSKKAHRWTLLYSVHYIFPF 141
>Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical
protein T21B10.4 protein.
Length = 418
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 82 FLLIKQYFIPTPTNNYKISQTVCLLCIHLLIEKFYVYHTW 201
+L+ KQ F PTN VC++ + ++I YVY W
Sbjct: 331 YLISKQVFEDEPTNVVMWLLVVCII-MFMIIMLLYVYIYW 369
>U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical
protein C02G6.2 protein.
Length = 816
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = +3
Query: 228 LNNHDHYTYKFLQYTYYVPIIISTF---------IKYVSIICQENLQPSFNELQWKES 374
LNN D Y Y+ LQ T+ + TF +I Q QP+F+ L+ KES
Sbjct: 754 LNNGDEYIYRHLQKTHDAGCVEVTFKFGVQNTYDNALAGLISQLIRQPAFSTLRTKES 811
>AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice
variant 1b-7b protein.
Length = 527
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 122 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 153
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 122 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 153
>AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice
variant 1a-7b protein.
Length = 564
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 159 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 190
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 159 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 190
>AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated
protein 62, isoform g protein.
Length = 490
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 85 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 116
>AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated
protein 62, isoform b protein.
Length = 527
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 122 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 153
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 122 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 153
>AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated
protein 62, isoform a protein.
Length = 564
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 159 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 190
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 KQYFIPTPTNNYKISQTVCLLCIHLL-IEKFY 186
KQY++P P + + Q++ +L HLL +EK +
Sbjct: 159 KQYYVPNPQLDQIMLQSIQMLRFHLLELEKVH 190
>Z81062-1|CAB02945.2| 365|Caenorhabditis elegans Hypothetical
protein F15A4.1 protein.
Length = 365
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 43 FLPITFLYS*KHIFLLIKQYFIPTPTNNYKISQTVCLLCIHLLIEKFYVYHTWTVKSNKD 222
++P+ FL + H+ L YF+ T + + + C L L++ F W V ++
Sbjct: 167 YIPV-FLITSTHLITLTFSYFVLTNRTGFYLGTSPCFLNSALVVMTFLA--VWKVNKHRH 223
Query: 223 D 225
+
Sbjct: 224 E 224
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 116 RPITTKYHRLCVYYVY 163
RP+ T YH+LCV Y
Sbjct: 44 RPLQTSYHKLCVIVPY 59
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 116 RPITTKYHRLCVYYVY 163
RP+ T YH+LCV Y
Sbjct: 44 RPLQTSYHKLCVIVPY 59
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Frame = +3
Query: 228 LNNHDHYTYKFLQYTYYVPIIISTF---------IKYVSIICQENLQPSFNELQWKES 374
LNN D Y Y+ LQ T+ V + T+ V +I Q +P+FN L+ E+
Sbjct: 813 LNNGDEYVYRHLQKTHDVGCVEVTYQIGVQNTYDNAVVGLIDQLIREPAFNTLRTNEA 870
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Frame = +3
Query: 228 LNNHDHYTYKFLQYTYYVPIIISTF---------IKYVSIICQENLQPSFNELQWKES 374
LNN D Y Y+ LQ T+ V + T+ V +I Q +P+FN L+ E+
Sbjct: 754 LNNGDEYVYRHLQKTHDVGCVEVTYQIGVQNTYDNAVVGLIDQLIREPAFNTLRTNEA 811
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Frame = +3
Query: 228 LNNHDHYTYKFLQYTYYVPIIISTF---------IKYVSIICQENLQPSFNELQWKES 374
LNN D Y Y+ LQ T+ V + T+ V +I Q +P+FN L+ E+
Sbjct: 813 LNNGDEYVYRHLQKTHDVGCVEVTYQIGVQNTYDNAVVGLIDQLIREPAFNTLRTNEA 870
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Frame = +3
Query: 228 LNNHDHYTYKFLQYTYYVPIIISTF---------IKYVSIICQENLQPSFNELQWKES 374
LNN D Y Y+ LQ T+ V + T+ V +I Q +P+FN L+ E+
Sbjct: 797 LNNGDEYVYRHLQKTHDVGCVEVTYQIGVQNTYDNAVVGLIDQLIREPAFNTLRTNEA 854
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,486,903
Number of Sequences: 27780
Number of extensions: 202506
Number of successful extensions: 453
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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