Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0407.Seq
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 268 IHIMYLSLYQHL*NTFQLFVKR 333
           I +++L+LY +L +TF  +  R
Sbjct: 11  IAVLFLALYYYLTSTFDFWKSR 32


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 54  NVLIFLKTYIPFNQAILHTHSDQ*LQNITDC 146
           +VL  L +YI    AIL   +D   +N + C
Sbjct: 89  SVLTILISYIYILMAILRMSADGGCRNFSTC 119


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 81  YMFLGI*ERYW*EIV*LLYTQT 16
           Y   G+   YW  +V ++YT T
Sbjct: 204 YSLFGMIMMYWFPLVVIIYTYT 225


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 231 LDVIFIAFDXPC 196
           +++ FI FD PC
Sbjct: 104 IEINFITFDIPC 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,307
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)