Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0407.Seq
         (411 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31814.1 68414.m03906 expressed protein                             27   4.9  
At1g17760.1 68414.m02198 suppressor of forked protein family pro...    27   4.9  
At1g53370.1 68414.m06050 F-box family protein contains F-box dom...    26   8.6  

>At1g31814.1 68414.m03906 expressed protein
          Length = 473

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 336 LQPSFNELQWKESDTHYSN 392
           L PSFN L W E D+H+S+
Sbjct: 35  LSPSFN-LSWSEIDSHFSS 52


>At1g17760.1 68414.m02198 suppressor of forked protein family
           protein / SUF family protein Contains Pfam PF05843:
           Suppressor of forked protein (Suf); identical to
           cleavage stimulation factor 77 (GI:21591637)
           [Arabidopsis thaliana]; similar to suppressor of forked
           protein; Su(f) protein [Drosophila virilis] GI:4092534
          Length = 734

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 148 CLLCIHLLIEKFYVYHTWTVKSNKDD 225
           CL+C++   + +Y Y  W VKS   D
Sbjct: 258 CLMCLYHYPDVWYDYAEWHVKSGSTD 283


>At1g53370.1 68414.m06050 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 334 ICNLRLMNYNGKSLIHTILTRERN 405
           +CNLRL N  GK  +H    + RN
Sbjct: 239 MCNLRLFNCKGKLGVHQYDVQSRN 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,402,828
Number of Sequences: 28952
Number of extensions: 165932
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)