Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0405.Seq
(408 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 1.8
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 2.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 3.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 3.1
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 21 4.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 5.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 7.1
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 20 9.4
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 20 9.4
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 20 9.4
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 20 9.4
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 20 9.4
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 20 9.4
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 1.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 39 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 173
M C P DT +Y+F R Y + T VI + + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 2.3
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 11 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 124
Y C + + LRR + ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 3.1
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +2
Query: 11 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 124
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 3.1
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +2
Query: 11 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 124
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 21.4 bits (43), Expect = 4.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 229 SEVVNFDESDNFCRSHGQVPATHLS 303
S NFD DN +H A H S
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSS 436
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.0 bits (42), Expect = 5.4
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +2
Query: 11 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 124
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 220 YTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.6 bits (41), Expect = 7.1
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = -3
Query: 253 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 146
I+Q L + +IG+ + + +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 20.2 bits (40), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 45 QCKPY*GDTANGSIYQFWFLRSY 113
+C Y D + +YQ++ LR Y
Sbjct: 140 RCLHYTVDKSKPKVYQWFDLRKY 162
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 20.2 bits (40), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 45 QCKPY*GDTANGSIYQFWFLRSY 113
+C Y D + +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 20.2 bits (40), Expect = 9.4
Identities = 8/38 (21%), Positives = 20/38 (52%)
Frame = +2
Query: 11 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 124
Y C ++ + LRR + +++++P + +S+L
Sbjct: 216 YICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFL 253
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 20.2 bits (40), Expect = 9.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 388 PESNPDSPLP 359
P SNP SP+P
Sbjct: 438 PSSNPVSPVP 447
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 20.2 bits (40), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 45 QCKPY*GDTANGSIYQFWFLRSY 113
+C Y D + +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 20.2 bits (40), Expect = 9.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 134 GNSRANTCN 160
GNSRANT N
Sbjct: 131 GNSRANTYN 139
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,288
Number of Sequences: 438
Number of extensions: 2010
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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