Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0404.Seq
(395 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-spec... 36 0.38
UniRef50_Q3LW38 Cluster: Putative uncharacterized protein; n=1; ... 32 3.5
UniRef50_Q8IFP1 Cluster: U5 small nuclear ribonucleoprotein-spec... 32 3.5
UniRef50_A6VHM2 Cluster: Putative uncharacterized protein; n=1; ... 32 3.5
UniRef50_A0PZD7 Cluster: Probable divalent cation transporter; n... 32 4.6
UniRef50_Q4XUB3 Cluster: U5 small nuclear ribonucleoprotein-spec... 32 4.6
UniRef50_A5K7K9 Cluster: Putative uncharacterized protein; n=1; ... 32 4.6
UniRef50_A0E2L0 Cluster: Chromosome undetermined scaffold_75, wh... 32 4.6
UniRef50_Q50FU8 Cluster: Cj81-079; n=5; Campylobacter jejuni|Rep... 31 6.1
UniRef50_Q8IC23 Cluster: Putative uncharacterized protein PF07_0... 31 6.1
UniRef50_A0BG11 Cluster: Chromosome undetermined scaffold_105, w... 31 6.1
UniRef50_Q4UEP5 Cluster: Isoleucyl-trna synthetase, putative; n=... 31 8.1
>UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-specific
protein, putative; n=4; Plasmodium|Rep: U5 small nuclear
ribonucleoprotein-specific protein, putative - Plasmodium
vivax
Length = 2675
Score = 35.5 bits (78), Expect = 0.38
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 29 KHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQXVQNQNLFI 199
K N + + Y KI SSYY++D M+ K + +H E E L++F + +N+F+
Sbjct: 1284 KLNTVSSTYVGKI--SSYYYVDYRSIDMYNKKLNRHTNETELLKLFGMSDEFKNIFV 1338
>UniRef50_Q3LW38 Cluster: Putative uncharacterized protein; n=1;
Bigelowiella natans|Rep: Putative uncharacterized
protein - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 873
Score = 32.3 bits (70), Expect = 3.5
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 102 YRQCLQKSYKNIIMKMKH-YK--FFLNXYKIKTFLL--LCMFNMHVQKCL*NIHKYNLNN 266
YR+ + KN I ++K+ YK F LN Y IK + LC F + + + Y+LN+
Sbjct: 416 YRKMVFLKMKNNIERIKYVYKLAFLLNLYSIKNCNISNLCEFYTNFLDFT-DRYNYSLNH 474
Query: 267 NLCQMAY*PFXKQFIKI 317
NL + + F F KI
Sbjct: 475 NLLEKQFSQFFNSFEKI 491
>UniRef50_Q8IFP1 Cluster: U5 small nuclear ribonucleoprotein-specific
protein, putative; n=6; cellular organisms|Rep: U5 small
nuclear ribonucleoprotein-specific protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 2874
Score = 32.3 bits (70), Expect = 3.5
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 29 KHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQXVQNQNLFI 199
K N + + Y KI SSYY++D ++ K + K+ E + L+IF+ + +N+FI
Sbjct: 1373 KLNTVSSTYIGKI--SSYYYVDYKSIDIYNKKLNKYTNEIDLLKIFTMSNEFKNIFI 1427
>UniRef50_A6VHM2 Cluster: Putative uncharacterized protein; n=1;
Methanococcus maripaludis C7|Rep: Putative
uncharacterized protein - Methanococcus maripaludis C7
Length = 240
Score = 32.3 bits (70), Expect = 3.5
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = +2
Query: 29 KHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQXVQNQNLFIIMH 208
K NL YVK +F + FI A+ T I+ HYY E LQ F LF+I++
Sbjct: 12 KSNLPKNVDYVKRIFELFKFIFSIYLAVLTAILTAHYYFKENLQDF-YLFTGIFLFVILY 70
Query: 209 V 211
V
Sbjct: 71 V 71
>UniRef50_A0PZD7 Cluster: Probable divalent cation transporter; n=1;
Clostridium novyi NT|Rep: Probable divalent cation
transporter - Clostridium novyi (strain NT)
Length = 313
Score = 31.9 bits (69), Expect = 4.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 336 IINQAMLFL*IV*XMVNMPFDISCYSNYIYGYFINIFAHAY*TCIIIKRF 187
II L L ++ + M F +SN +YGY+ + A TCI+I F
Sbjct: 258 IITSIFLPLELISGIQGMNFTNIIFSNSVYGYYYTLIIMAITTCILISIF 307
>UniRef50_Q4XUB3 Cluster: U5 small nuclear ribonucleoprotein-specific
protein, putative; n=5; Plasmodium (Vinckeia)|Rep: U5
small nuclear ribonucleoprotein-specific protein,
putative - Plasmodium chabaudi
Length = 1538
Score = 31.9 bits (69), Expect = 4.6
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 74 SSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQXVQNQNLFI 199
SS+Y+ID M+ K + K+ E E L+IF+ + +N+FI
Sbjct: 1137 SSFYYIDYKSMDMYNKKLNKYTSEIELLKIFAMSEEFKNIFI 1178
>UniRef50_A5K7K9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 2581
Score = 31.9 bits (69), Expect = 4.6
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 23 WIKHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQXVQNQNLFII 202
+IK N +T+ ILF+ Y L A KI+ K+ Y++E + ++ QN LFI+
Sbjct: 1199 FIKPNPFFTDV---ILFACYRKYIYLLNAQKKKIIKKYSYDSELKNLSAEWSQNGYLFIV 1255
Query: 203 MH 208
H
Sbjct: 1256 SH 1257
>UniRef50_A0E2L0 Cluster: Chromosome undetermined scaffold_75, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_75,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 379
Score = 31.9 bits (69), Expect = 4.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 72 FLLTTLLIYHYRQCLQKSYKNIIMKMKHYKFFLNXYK 182
FL+ T+L+Y C+Q +YK M +F+ N Y+
Sbjct: 204 FLIITVLLYSMAICIQNNYKISFYAMTDKQFYYNFYQ 240
>UniRef50_Q50FU8 Cluster: Cj81-079; n=5; Campylobacter jejuni|Rep:
Cj81-079 - Campylobacter jejuni
Length = 333
Score = 31.5 bits (68), Expect = 6.1
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 93 IYHYRQCLQKSYKNIIMKMKHYKFFLNXYKI-KTFLLLCMFNMH-VQKCL*NIHKYNL 260
IY + +SY NI +K YK LN I ++LL + H V CL I +YNL
Sbjct: 198 IYDHGGLADQSYLNIALKELTYKLPLNWNLIVPEYILLDGYERHYVVNCLDEISEYNL 255
>UniRef50_Q8IC23 Cluster: Putative uncharacterized protein
PF07_0018; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF07_0018 - Plasmodium
falciparum (isolate 3D7)
Length = 1337
Score = 31.5 bits (68), Expect = 6.1
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Frame = +3
Query: 93 IYHYRQCLQKSYKNIIMK--MKHYK-----FFLNXYKIKTFLL--LCMFNMHV---QKCL 236
IY+ C + YKNI+ K +K K F L +K +L L M+ M+V +KC
Sbjct: 158 IYYENYCFKNYYKNILSKNDIKELKKDSCPFILLNHKNAHIVLPYLFMYQMNVLKEEKCK 217
Query: 237 *NIHKYNLNNNL 272
N K+NL+NN+
Sbjct: 218 -NFKKHNLSNNM 228
>UniRef50_A0BG11 Cluster: Chromosome undetermined scaffold_105,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_105,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1034
Score = 31.5 bits (68), Expect = 6.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 182 FVXIEKKFVMFHFHNNVFIRFL*TLPIMINQ*SSKKKIIFLHNNLYIVNCV 30
F +E++F+++ + ++IRF + I NQ S K L + +Y++N V
Sbjct: 804 FNQVEEEFLLYKLKSIIYIRFYDLISIQDNQLSGKIVGFQLQHKIYVLNIV 854
>UniRef50_Q4UEP5 Cluster: Isoleucyl-trna synthetase, putative; n=2;
Theileria|Rep: Isoleucyl-trna synthetase, putative -
Theileria annulata
Length = 1241
Score = 31.1 bits (67), Expect = 8.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 102 YRQCLQKSYKNIIMKMKHYKFFLNXYKI 185
Y++ +K + NI+ + K YK+ LN +KI
Sbjct: 109 YQKLFEKRFLNILKETKRYKYLLNHFKI 136
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,527,396
Number of Sequences: 1657284
Number of extensions: 6427210
Number of successful extensions: 12602
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12596
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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