Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0404.Seq
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   0.83 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   1.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.9  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   5.9  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    20   7.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    20   7.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    20   7.7  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    20   7.7  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 KHYYENETLQIFSQXVQNQNL 193
           +HYY  +TLQ  +    N NL
Sbjct: 108 EHYYNQKTLQANNNDASNGNL 128


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 87  LLIYHYRQCLQKSYKNIIMKMKHYKFFLNXYKIKTFLLLCMFNMHVQKCL 236
           ++ Y Y   L++ +K I + +K  +FF    KIK  +LL    + V K L
Sbjct: 48  IVFYMYTLILEERFKLINLIIKQEEFF--SPKIKRMVLLHKTLVRVAKSL 95


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 26  IKHNLLYTNYYVKILFSSYY 85
           +KHNL   +  VK + + YY
Sbjct: 116 LKHNLFLLDNIVKPIIAFYY 135


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 LIDYSHIIKI*HSINL 372
           L+DY H +KI  +I++
Sbjct: 632 LMDYEHTVKINENISM 647


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 LIDYSHIIKI*HSINL 372
           L+DY H +KI  +I++
Sbjct: 865 LMDYEHTVKINENISM 880


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 LIDYSHIIKI*HSINL 372
           L+DY H +KI  +I++
Sbjct: 865 LMDYEHTVKINENISM 880


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 223 TCILNMHNNKKVLILYXLRKNL*CFIFIIMFLY 125
           TC  +   + K+LILY +   +    F+  +LY
Sbjct: 30  TCTRSNFRSSKLLILYNIILQVLFVSFVSYWLY 62



 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 285 MPFDISCYSNY 253
           + FD+ C SNY
Sbjct: 473 LEFDVKCVSNY 483



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 41  LYTNYYVKILFSSYYFID 94
           +Y N Y+ ILF+ + +++
Sbjct: 73  IYKNTYLIILFADFAYLE 90


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 223 TCILNMHNNKKVLILYXLRKNL*CFIFIIMFLY 125
           TC  +   + K+LILY +   +    F+  +LY
Sbjct: 48  TCTRSNFRSSKLLILYNIILQVLFVSFVSYWLY 80



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 41  LYTNYYVKILFSSYYFID 94
           +Y N Y+ ILF+ + +++
Sbjct: 91  IYKNTYLIILFADFAYLE 108


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 156 YKFFLNXYKIKTFLL 200
           YK F++ + + TFL+
Sbjct: 181 YKVFVDLFNLSTFLI 195


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 156 YKFFLNXYKIKTFLL 200
           YK F++ + + TFL+
Sbjct: 341 YKVFVDLFNLSTFLI 355


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 156 YKFFLNXYKIKTFLL 200
           YK F++ + + TFL+
Sbjct: 341 YKVFVDLFNLSTFLI 355


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 129 KNIIMKMKHYKFFLNXYKIKT 191
           K ++ K +H K F+N   ++T
Sbjct: 172 KILVEKYRHQKNFINESNVET 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,926
Number of Sequences: 336
Number of extensions: 2124
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)