Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0404.Seq
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   0.46 
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   5.6  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.4  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    24   9.8  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 181 KSKPFYYYACLICMCKNVY 237
           ++ PF YY CL C CK+++
Sbjct: 542 RADPFAYYYCLQCECKSLH 560


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 44  YTNYYVKILFSSYYFIDL 97
           Y  YY+  LF +YY I L
Sbjct: 192 YPQYYMSPLFKAYYLIQL 209


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 38  LLYTNYYVKILFSSYYFIDLS 100
           LL T Y V +L S+YY   LS
Sbjct: 77  LLLTKYPVYVLLSTYYLTPLS 97


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 120 KSYKNIIMKMKHYKFFLN 173
           ++YKNI++ + H + FLN
Sbjct: 398 QTYKNIVLVVSHDRSFLN 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,319
Number of Sequences: 5004
Number of extensions: 31075
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)