Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0404.Seq
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56399| Best HMM Match : DUF23 (HMM E-Value=1.9e-28)                 27   4.2  
SB_45633| Best HMM Match : DUF23 (HMM E-Value=3.2e-35)                 27   4.2  
SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.3  

>SB_56399| Best HMM Match : DUF23 (HMM E-Value=1.9e-28)
          Length = 419

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +3

Query: 72  FLLTTLLIYHYRQC-----LQKSYKNIIM--KMKHYKFFLNXYKIKTFLLL 203
           +++T   +YHYRQC     L+ + K++I   +MK Y+  L     K   L+
Sbjct: 369 WIITEATVYHYRQCAKYEDLENACKSLIFENRMKLYRDLLKKKVAKVLALV 419


>SB_45633| Best HMM Match : DUF23 (HMM E-Value=3.2e-35)
          Length = 334

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +3

Query: 72  FLLTTLLIYHYRQC-----LQKSYKNIIM--KMKHYKFFLNXYKIKTFLLL 203
           +++T   +YHYRQC     L+ + K++I   +MK Y+  L     K   L+
Sbjct: 284 WIITEATVYHYRQCAKYEDLENACKSLIFENRMKLYRDLLKKKVAKVLALV 334


>SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 84  TLLIYHYRQCLQKSYKNIIMKMKHYKFFLNXYKIKTFLL 200
           TLL+ +YR  L  +Y  + + +++Y+ +L    +  +L+
Sbjct: 136 TLLVTYYRLTLLVTYYRLTLLVRYYRLYLIDQVLSPYLI 174



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 84  TLLIYHYRQCLQKSYKNIIMKMKHYKFFLNXYKIKTFLLLCMF 212
           TLL+ HYR  L  +Y  + + + +Y+  L     +  LL+  F
Sbjct: 73  TLLVMHYRITLLVTYYRLTLLVTYYRLTLLVTHYRLTLLVTYF 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,935
Number of Sequences: 59808
Number of extensions: 188920
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)