Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0404.Seq
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036744-1|AAH36744.1|  331|Homo sapiens RNASEH2B protein protein.     29   5.6  
BC010174-1|AAH10174.1|  308|Homo sapiens RNASEH2B protein protein.     29   5.6  
BC007332-1|AAH07332.1|  308|Homo sapiens RNASEH2B protein protein.     29   5.6  
BC005088-1|AAH05088.1|  308|Homo sapiens RNASEH2B protein protein.     29   5.6  
BC001397-1|AAH01397.1|  308|Homo sapiens RNASEH2B protein protein.     29   5.6  
AL137881-1|CAI13913.1|  312|Homo sapiens ribonuclease H2, subuni...    29   5.6  
AK223340-1|BAD97060.1|  312|Homo sapiens hypothetical protein FL...    29   5.6  
BC099650-1|AAH99650.1|  907|Homo sapiens leucine-rich repeat-con...    29   7.4  
BC096326-1|AAH96326.1|  883|Homo sapiens LGR5 protein protein.         29   7.4  
BC096325-1|AAH96325.1|  883|Homo sapiens LGR5 protein protein.         29   7.4  
BC096324-1|AAH96324.1|  907|Homo sapiens leucine-rich repeat-con...    29   7.4  
AF062006-1|AAC28019.1|  907|Homo sapiens orphan G protein-couple...    29   7.4  
AF061444-1|AAC77911.1|  907|Homo sapiens G protein-coupled recep...    29   7.4  

>BC036744-1|AAH36744.1|  331|Homo sapiens RNASEH2B protein protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>BC010174-1|AAH10174.1|  308|Homo sapiens RNASEH2B protein protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>BC007332-1|AAH07332.1|  308|Homo sapiens RNASEH2B protein protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>BC005088-1|AAH05088.1|  308|Homo sapiens RNASEH2B protein protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>BC001397-1|AAH01397.1|  308|Homo sapiens RNASEH2B protein protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>AL137881-1|CAI13913.1|  312|Homo sapiens ribonuclease H2, subunit B
           protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>AK223340-1|BAD97060.1|  312|Homo sapiens hypothetical protein
           FLJ11712 variant protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  IYHYRQCLQKSYKNIIMKMKHYKFFLN 173
           IY +  CLQ+ ++  + K KH+ +F+N
Sbjct: 50  IYLFNMCLQQLFEVKVFKEKHHSWFIN 76


>BC099650-1|AAH99650.1|  907|Homo sapiens leucine-rich
           repeat-containing G protein-coupled receptor 5 protein.
          Length = 907

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 NFFSIXTKSKPFYYYACLICMCKNVYKIS 246
           NF  +     P+ Y  C   +C+N YKIS
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKIS 492


>BC096326-1|AAH96326.1|  883|Homo sapiens LGR5 protein protein.
          Length = 883

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 NFFSIXTKSKPFYYYACLICMCKNVYKIS 246
           NF  +     P+ Y  C   +C+N YKIS
Sbjct: 440 NFPELKVIEMPYAYQCCAFGVCENAYKIS 468


>BC096325-1|AAH96325.1|  883|Homo sapiens LGR5 protein protein.
          Length = 883

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 NFFSIXTKSKPFYYYACLICMCKNVYKIS 246
           NF  +     P+ Y  C   +C+N YKIS
Sbjct: 440 NFPELKVIEMPYAYQCCAFGVCENAYKIS 468


>BC096324-1|AAH96324.1|  907|Homo sapiens leucine-rich
           repeat-containing G protein-coupled receptor 5 protein.
          Length = 907

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 NFFSIXTKSKPFYYYACLICMCKNVYKIS 246
           NF  +     P+ Y  C   +C+N YKIS
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKIS 492


>AF062006-1|AAC28019.1|  907|Homo sapiens orphan G protein-coupled
           receptor HG38 protein.
          Length = 907

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 NFFSIXTKSKPFYYYACLICMCKNVYKIS 246
           NF  +     P+ Y  C   +C+N YKIS
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKIS 492


>AF061444-1|AAC77911.1|  907|Homo sapiens G protein-coupled receptor
           LGR5 protein.
          Length = 907

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 NFFSIXTKSKPFYYYACLICMCKNVYKIS 246
           NF  +     P+ Y  C   +C+N YKIS
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKIS 492


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,987,265
Number of Sequences: 237096
Number of extensions: 963242
Number of successful extensions: 1123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)