Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0404.Seq
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    29   0.91 
U29614-4|ABD94109.1|  244|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical ...    28   2.8  
U28928-3|AAA68336.1|  236|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U23170-3|AAC46700.2|  125|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine re...    26   8.5  
AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine re...    26   8.5  

>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 72  FLLTTLLIYHYRQCLQKSYKNIIMKMKHYKFFLNXYKIKT 191
           FLL+T  ++      Q +Y+N + K+   K  LN  K++T
Sbjct: 7   FLLSTFFVFSIVSGQQTNYENCLTKLNKMKNILNNLKLET 46


>U29614-4|ABD94109.1|  244|Caenorhabditis elegans Hypothetical
           protein F18E9.8 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 17  YFWIKHNLLYTNYYVKILFSSYYFI-DLSL*AMFTKIV*KHYY 142
           +FW   N++  N   K+  ++YY I   +L  +FT I+  HY+
Sbjct: 48  FFWRWQNIILPNSSAKLKTATYYGIWVFALTILFTSIIIIHYH 90


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 108 QCLQKSYKNIIMKMKHYKFFLNXYKIKTFLLLCMFNMHVQKCL*NIHKYNLNNN 269
           +C+ KS ++  MKMK     L    IK  +L  +    ++  + N H Y L  N
Sbjct: 94  KCISKSTESNSMKMKIRTVLLVFVFIKLCILFTVLQETIESIMANDHPYLLGTN 147


>AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical
           protein T05G11.4 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 71  FSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQXVQNQNLF 196
           FS YYF+      +  K+  K    N T  I S   QN NLF
Sbjct: 254 FSVYYFMSSRYRKIAAKLFGKANNSNSTFTIHSTGTQNFNLF 295


>U28928-3|AAA68336.1|  236|Caenorhabditis elegans Hypothetical
           protein C44B7.5 protein.
          Length = 236

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 141 MKMKHYKFFLNXYKIKTFLLLCMFNMHVQKCL*NIHKY 254
           M+ KH+   L    I + L L     H+  CL + HKY
Sbjct: 1   MRKKHFNMILKLALISSLLALAASRTHLTDCL-DDHKY 37


>U23170-3|AAC46700.2|  125|Caenorhabditis elegans Hypothetical
           protein F58F12.2 protein.
          Length = 125

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 265 LFKLYLWIFYKHFCTCILNMHNNKKVLILYXLRKNL 158
           +FK    +F+K F   + N H   + L+L+ LRK L
Sbjct: 20  IFKFLFKLFFK-FVNYLWNSHKFHEQLVLHNLRKRL 54


>AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein31 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 268 LLFKLYLWIFYKHFCTC 218
           ++ + YLW+F   FCTC
Sbjct: 121 MVLRNYLWVFSIAFCTC 137


>AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein32 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 268 LLFKLYLWIFYKHFCTC 218
           ++ + YLW+F   FCTC
Sbjct: 121 MVLRNYLWVFSIAFCTC 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,375,983
Number of Sequences: 27780
Number of extensions: 168965
Number of successful extensions: 293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)