Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0404.Seq
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   2.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   3.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   9.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   9.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   9.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   9.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   9.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   9.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   9.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 162 FFLNXYKIKTFLLLCMFNMHVQKCL*NIHKYNLNNNL 272
           +FLN YK K   +    ++H+Q     I +Y L + +
Sbjct: 666 YFLNDYKHKDVDVTLPLDLHIQNA---IREYGLGSTV 699


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 240 NIHKYNLNNNLCQMAY 287
           N +KYN NNN C+  Y
Sbjct: 94  NNYKYNYNNN-CKKLY 108


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 256 LYLWIFYKHFCTCILNMHNNKKVLILYXLRKNL*CFI 146
           ++LW+F+  F +  L   + ++ +I   L  +  C I
Sbjct: 218 IFLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVI 254


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 105 RQCLQKSYKNIIMKMKHYKF 164
           +  L ++Y N+ M MK+Y +
Sbjct: 281 KHMLIEAYTNLSMTMKYYDY 300


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 105 RQCLQKSYKNIIMKMKHYKF 164
           +  L ++Y N+ M MK+Y +
Sbjct: 281 KHMLIEAYTNLSMTMKYYDY 300


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 92  NNYKYNYNNN 101


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 92  NNYKYNYNNN 101


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 93  NNYKYNYNNN 102


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 93  NNYKYNYNNN 102


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 93  NNYKYNYNNN 102


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 93  NNYKYNYNNN 102


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 94  NNYKYNYNNN 103


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 94  NNYKYNYNNN 103


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 94  NNYKYNYNNN 103


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 94  NNYKYNYNNN 103


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 NIHKYNLNNN 269
           N +KYN NNN
Sbjct: 327 NNYKYNYNNN 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,632
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)