Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0403.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.28 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   4.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   7.9  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 125 THVAGDNEQYTGEXXXXXXXXXTVNGKTVSSGGVSELTNDGKAAKKRSWNTKM 283
           T V+   E   G          T   +  ++ G ++   DG+AA K+SW  +M
Sbjct: 586 TPVSATEEHAAGTTKPAPAAGATATAENETADGKAQTATDGEAAPKKSWFKRM 638


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 56  GFSDTFKMPEIPEIKSLEFDDIKTHVA 136
           GFSD  ++ E P    + +DDI +H A
Sbjct: 919 GFSDINEIKEHPFFNGINWDDIFSHEA 945


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 23   FVWEDDDDLFPGFSD--TFKMPEIPEIKSLEFDDIKTHV--AGDNEQYTGE 163
            F WED+D+   G+ D   +   E+ E  S  F+ ++       DN+ +  E
Sbjct: 1943 FEWEDEDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETSDNDDHLEE 1993


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 249 KPRRKGHGIQRWRLNKSSDY 308
           KPR+K  G   WR   + +Y
Sbjct: 27  KPRKKNLGNNEWRFKNAGEY 46


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 127 SFNIIKFKRLYLWYLWHLERI 65
           SF +++  R +LW  +HL+ I
Sbjct: 365 SFEMLEILRRFLWLFFHLDAI 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,789
Number of Sequences: 5004
Number of extensions: 24517
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)