Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0403.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0610 + 24335153-24337724,24337835-24338256                       30   0.81 
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    29   1.4  
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    29   1.9  
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647...    27   4.3  
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041...    27   5.7  
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459     27   5.7  
07_01_1153 - 10842259-10842390,10843348-10845315                       27   7.6  

>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  SLLNLMILKLTSREITSNIPESLSR 173
           +L  L+ LKLTS ++T NIP +L R
Sbjct: 481 NLRQLVYLKLTSNKLTGNIPNALDR 505


>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
            525209-525401,525978-526330,526693-526791,526864-526935,
            527062-527213,527338-527386,527755-527885,528067-528307,
            528392-528565,528656-528797,529236-529282,529370-529450,
            530170-530271,530345-530440,531437-531444,531575-531616,
            531830-531894,534761-534853,534888-534959,535303-535509,
            536318-537226,537503-538158
          Length = 1429

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 26   VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDD 118
            +W+ DDD FP     F+   IP+  S +FDD
Sbjct: 1072 IWDSDDD-FPNEEKHFRTQIIPKDLSQDFDD 1101


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 32  EDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTG 160
           E + D  P   +T   PE PE  S++ +  K + A DNE+Y G
Sbjct: 413 EVEQDQMPPVQETLHNPE-PE--SIDIEPPKENTADDNERYVG 452


>04_01_0492 +
           6476586-6476873,6477414-6477686,6477769-6477948,
           6478436-6478696,6479171-6479303,6479404-6479494,
           6479921-6480023,6480557-6480660,6480809-6480902,
           6480985-6481140,6481224-6481286,6481388-6481453,
           6481670-6481870,6481999-6482076,6482165-6482284,
           6482382-6482462,6482548-6482633,6482920-6483031,
           6483093-6483170,6483306-6483482
          Length = 914

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 26  VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQY 154
           VW+DD  L  G+  + K+  I    S   + I+  +   NE+Y
Sbjct: 245 VWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKY 287


>02_04_0458 -
           23102262-23102377,23102505-23102661,23103094-23104140,
           23104357-23104500,23105389-23105457
          Length = 510

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 162 SPVYCSLSPAT*VLISSNSRDFISGISGILNVSENPGN 49
           +P +C   PA+ V + S+   FIS  + ILN +  P +
Sbjct: 33  NPQFCHTQPASFVTVISDRTTFISIFAKILNSAIQPAS 70


>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
          Length = 867

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 99  SLLNLMILKLTSREITSNIPESLSRVT 179
           +L +L+ L L++ EIT +IPES+  +T
Sbjct: 300 NLRSLIKLYLSTNEITGSIPESIGNLT 326


>07_01_1153 - 10842259-10842390,10843348-10845315
          Length = 699

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 191 TVNGKTVSSGGVSELTN 241
           T++G T++SGG+ ELTN
Sbjct: 41  TMDGATITSGGLLELTN 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,818
Number of Sequences: 37544
Number of extensions: 146385
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)