Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0403.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5093| Best HMM Match : HC2 (HMM E-Value=6.9)                        29   1.9  
SB_7455| Best HMM Match : HC2 (HMM E-Value=8.7)                        27   4.5  
SB_29687| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           27   7.8  

>SB_5093| Best HMM Match : HC2 (HMM E-Value=6.9)
          Length = 400

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 197 NGKTVSSGGVSELTNDGKAAKKRSWNTKMAIK*IQRLFTNKKI*VKNIISQKGI 358
           N K V+  G   L N+ + A KR +N K      +RLF+NK +  K + S +G+
Sbjct: 180 NSKRVADKG---LFNNKRVADKRLFNNKGVAD--KRLFSNKGVADKRLFSNQGV 228


>SB_7455| Best HMM Match : HC2 (HMM E-Value=8.7)
          Length = 153

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 197 NGKTVSSGGVSELTNDGKAAKKRSWNTKMAIK*IQRLFTNKKI*VKNIISQKGILN 364
           N K V+  G   L N+ + A K  +N K      + LF NK++  K + + KG+ N
Sbjct: 71  NNKRVADKG---LFNNKRVADKGLFNNKRVAD--KGLFNNKRVADKGLFNNKGVAN 121


>SB_29687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 197 NGKTVSSGGVSELTNDGKAAKKRSWNTKMAIK*IQRLFTNKKI*VKNIISQKGI 358
           N K V+  G   L N+ + A K  +N K     ++ LF NK++  K + + KG+
Sbjct: 15  NNKRVADTG---LFNNKRVADKGLFNNKRVA--VKGLFNNKRVADKGLFNNKGV 63


>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 20  GFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAG 139
           GF   + D LF    +  +  +IP I++L  DD+K  + G
Sbjct: 849 GFCERNRDVLFKDLIELMQSSDIPFIRTLFPDDVKAEMRG 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,918
Number of Sequences: 59808
Number of extensions: 167250
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)