Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0403.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.33 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.76 

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 80  PEIP-EIKSLEFDDIKTHVA-GDNEQYTGE 163
           PEI  E++ +E+DDIKT ++ G N+    E
Sbjct: 290 PEIKKEVEDMEYDDIKTELSTGMNDDIPPE 319



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 261 KGHGIQRW-RLNKSSDYSRIKKFKSKILFHK 350
           KG+G+  W    + SD SR+    +K L HK
Sbjct: 478 KGNGVYAWIGAGRDSD-SRLLDLCTKFLMHK 507


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 2    ITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 124
            I++A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1856 ISVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1895


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 2    ITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 124
            I++A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1852 ISVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,250
Number of Sequences: 438
Number of extensions: 1710
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)