Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0403.Seq
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote... 31 0.30
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote... 31 0.30
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont... 31 0.30
At3g05360.1 68416.m00584 disease resistance family protein / LRR... 28 2.8
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont... 28 2.8
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr... 27 4.8
At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-relate... 27 6.4
At5g53080.1 68418.m06594 kinesin light chain-related low similar... 26 8.5
At5g45180.1 68418.m05546 flavin-containing monooxygenase family ... 26 8.5
>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 694
Score = 31.1 bits (67), Expect = 0.30
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 99 SLLNLMILKLTSREITSNIPESLSRVT 179
SLL L +L L+S IT IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150
>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 864
Score = 31.1 bits (67), Expect = 0.30
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 99 SLLNLMILKLTSREITSNIPESLSRVT 179
SLL L +L L+S IT IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150
>At3g53240.1 68416.m05868 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 891
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 57 DFQIRSRCQRYQR*SLLNLMILKLTSREITSNIPESL 167
+F ++ R Y R +L + L L+S E++ NIPE L
Sbjct: 686 EFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEEL 722
>At3g05360.1 68416.m00584 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to
elicitor-inducible LRR receptor-like protein EILP
[Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 786
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 102 LLNLMILKLTSREITSNIPESLSRVT 179
L L +L L+ TSNIP+SL+ +T
Sbjct: 621 LKELRLLNLSGNSFTSNIPQSLANLT 646
>At1g80080.1 68414.m09374 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 496
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 102 LLNLMILKLTSREITSNIPESLSRV 176
L NLMIL L++ I +IP+SL+R+
Sbjct: 326 LKNLMILVLSNTNIQGSIPKSLTRL 350
>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
protein kinase family protein
Length = 620
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 102 LLNLMILKLTSREITSNIPESL 167
LLNL L+L S IT IPE L
Sbjct: 98 LLNLQYLELYSNNITGEIPEEL 119
>At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-related
similar to cyclopropane synthase [Sterculia foetida]
GI:21069167
Length = 305
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 102 LLNLMILKLTSREITSNIPESLSRVT 179
LLNL+++ + S+E+ SN+ E R T
Sbjct: 98 LLNLIMILIASKELNSNLAEKRGRWT 123
>At5g53080.1 68418.m06594 kinesin light chain-related low similarity
to kinesin light chain from [Plectonema boryanum]
GI:2645229, [Loligo pealei] GI:403179; contains Pfam
profile PF00515: TPR Domain
Length = 564
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 288 LNKSSDYSRIKKFKSKILFHKRGF*IVKNK 377
++ S YS I KF++ IL H+R I++N+
Sbjct: 190 MHVGSMYSVIGKFENAILVHQRAIRILENR 219
>At5g45180.1 68418.m05546 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P31513
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Homo sapiens}; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 453
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 252 PRRKGHGIQRWRLNKSSDYSRIKKFKSKILFH 347
P +KG I + ++ S DYS+++K K+ L H
Sbjct: 168 PVKKGPEIFKGKVLHSMDYSKLQKEKASQLLH 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,477,446
Number of Sequences: 28952
Number of extensions: 124764
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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