Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0402.Seq
         (349 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   2.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    20   8.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    20   8.3  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  YSHK*LNNKCKFHSIQVLHIFLNF 93
           Y H  L N  + +S+Q+LH  + F
Sbjct: 331 YFHMDLENNVQSYSLQLLHQKVQF 354


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 41  ITSANFIQFKCCTSFLIFNTVVNNCV 118
           I  A+   +KC   + I NTV++  V
Sbjct: 144 IYEAHGFSYKCGIQYHICNTVISATV 169


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 41  ITSANFIQFKCCTSFLIFNTVVNNCV 118
           I  A+   +KC   + I NTV++  V
Sbjct: 140 IYEAHGFSYKCGIQYHICNTVISATV 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,437
Number of Sequences: 336
Number of extensions: 1042
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)