Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0402.Seq
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0067 + 578828-579176,579429-579505,579850-579954                 26   7.1  
09_05_0007 - 20036981-20037159,20037690-20037943,20038103-200383...    26   9.3  

>12_01_0067 + 578828-579176,579429-579505,579850-579954
          Length = 176

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
 Frame = -1

Query: 112 IIYNSVKN*ERCATL--------ELNEICTCYLTIYENKS 17
           +I N V+N   CA +        +L E+ TCY+TIY  ++
Sbjct: 105 VISNKVENTSPCANMVSVLDYLGKLRELRTCYVTIYAQRA 144


>09_05_0007 -
           20036981-20037159,20037690-20037943,20038103-20038355,
           20038447-20038640,20039122-20039252,20039378-20039488,
           20039834-20039932
          Length = 406

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 79  CATLELNEICTCYLTIYENKSLAFL 5
           CA +  N +C+CY  + ENK +A +
Sbjct: 349 CADVP-NGVCSCYGVVQENKRIAHI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,876,885
Number of Sequences: 37544
Number of extensions: 77897
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)