Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0402.Seq
         (349 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118531-1|AAM49900.1|  423|Drosophila melanogaster LD25556p pro...    28   3.7  
AE014297-2247|AAF55346.2|  649|Drosophila melanogaster CG6588-PA...    28   3.7  
M32311-1|AAA28529.1|  652|Drosophila melanogaster fasciclin I pr...    27   6.5  
M20545-1|AAA28531.1|  652|Drosophila melanogaster protein ( D.me...    27   6.5  
AE014297-2246|AAN13715.1|  652|Drosophila melanogaster CG6588-PB...    27   6.5  
AE014297-2245|AAN13714.1|  655|Drosophila melanogaster CG6588-PC...    27   6.5  

>AY118531-1|AAM49900.1|  423|Drosophila melanogaster LD25556p
           protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 152 SVAIVNTLIYVTHYPLIVFDNTRCQFLSKTCK 247
           ++ + N ++++ H PL++ D T  QFL +  +
Sbjct: 295 NIPVSNGVVHLIHRPLMIIDTTVTQFLQENAE 326


>AE014297-2247|AAF55346.2|  649|Drosophila melanogaster CG6588-PA,
           isoform A protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 152 SVAIVNTLIYVTHYPLIVFDNTRCQFLSKTCK 247
           ++ + N ++++ H PL++ D T  QFL +  +
Sbjct: 295 NIPVSNGVVHLIHRPLMIIDTTVTQFLQENAE 326


>M32311-1|AAA28529.1|  652|Drosophila melanogaster fasciclin I
           protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 152 SVAIVNTLIYVTHYPLIVFDNTRCQFL 232
           ++ + N ++++ H PL++ D T  QFL
Sbjct: 295 NIPVSNGVVHLIHRPLMIIDTTVTQFL 321


>M20545-1|AAA28531.1|  652|Drosophila melanogaster protein (
           D.melanogaster fasciclinI mRNA, complete cds. ).
          Length = 652

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 152 SVAIVNTLIYVTHYPLIVFDNTRCQFL 232
           ++ + N ++++ H PL++ D T  QFL
Sbjct: 295 NIPVSNGVVHLIHRPLMIIDTTVTQFL 321


>AE014297-2246|AAN13715.1|  652|Drosophila melanogaster CG6588-PB,
           isoform B protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 152 SVAIVNTLIYVTHYPLIVFDNTRCQFL 232
           ++ + N ++++ H PL++ D T  QFL
Sbjct: 295 NIPVSNGVVHLIHRPLMIIDTTVTQFL 321


>AE014297-2245|AAN13714.1|  655|Drosophila melanogaster CG6588-PC,
           isoform C protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 152 SVAIVNTLIYVTHYPLIVFDNTRCQFL 232
           ++ + N ++++ H PL++ D T  QFL
Sbjct: 295 NIPVSNGVVHLIHRPLMIIDTTVTQFL 321


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,187
Number of Sequences: 53049
Number of extensions: 156808
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 817309116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)