Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0402.Seq
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    29   0.69 
Z81549-7|CAB04471.1|  327|Caenorhabditis elegans Hypothetical pr...    27   4.9  

>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 121 FNAIIYNSVKN*ERCATLELNEICTCYLTIYENKSL 14
           FN +I   V +  +C TL+L E CTC  T YE  S+
Sbjct: 6   FNLLIAGWVYS--QCPTLQLQEPCTCTSTRYEAVSI 39


>Z81549-7|CAB04471.1|  327|Caenorhabditis elegans Hypothetical
           protein F55C9.8 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CCHCQHINICNTLSS 198
           C +C+H+NIC  +SS
Sbjct: 177 CVNCEHLNICYKMSS 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,007,830
Number of Sequences: 27780
Number of extensions: 92635
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)