Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0402.Seq
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   9.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   9.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 246 LHVLDKNWH 220
           LH++D NW+
Sbjct: 34  LHLIDANWY 42


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 249 SLHVLDKNWHLV 214
           +L +LD+NW L+
Sbjct: 356 ALKLLDENWDLI 367


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 249 SLHVLDKNWHLV 214
           +L +LD+NW L+
Sbjct: 356 ALKLLDENWDLI 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,359
Number of Sequences: 438
Number of extensions: 1135
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)